相關文章：引入套件

# 套件列表

套件 |
用途 |

boot |
bootstraping 方法與抽樣 |

class |
分類方法 |

cluster |
分群(聚類)方法 |

foreign |
讀取外部格式 (S3, Stata, SAS, Minitab, SPSS) … |

KernSmooth |
核密度擬合方法 |

lattice |
Grid 新一代圖形套件 |

MASS Venables & Ripley |
Venables&Ripley 的 Modern Applied Statistics with S 書籍之範例程式與函式庫 |

mgcv |
廣義的可加模型 |

nlme |
線性與非線性回合效應模型 |

nnet |
類神經網路和多項對數線性模型 |

rpart |
遞迴分割方法 |

spatial |
空間分析 (Kriging) |

survival |
生存分析 |

# 關注套件

- jit Just-in-time compiler for the R language
- languageR Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
- penalizedSVM Feature Selection SVM using penalty functions
- rminer Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
- SVMMaj SVMMaj algorithm

svDialogs SciViews GUI API - Dialog boxes

svGUI SciViews GUI API - Functions to manage GUI client

svIDE SciViews GUI API - IDE and code editor functions

svMisc SciViews GUI API - Miscellaneous functions

svSocket SciViews GUI API - R Socket Server

svSweave SciViews GUI API - Sweave functions

svTools SciViews GUI API - Tools (wrapper for packages tools and codetools)

svUnit SciViews GUI API - Unit testing

svWidgets SciViews GUI API - Widgets & Windows

svmpath svmpath: the SVM Path algorithm

wSVM Weighted SVM with boosting algorithm for improving accuracy

ade4TkGUI ade4 Tcl/Tk Graphical User Interface

BiplotGUI Interactive Biplots in R

biOpsGUI GUI for Basic image operations

CommonJavaJars Useful libraries for building a Java based GUI under R

caGUI A Tcl/Tk GUI for the functions in the ca package

detrendeR Start the detrendeR Graphical User Interface (GUI)

fgui Function GUI

GrapheR A multiplatform GUI for drawing customizable graphs in R

TGUICore Teaching GUI - Core functionality

TGUITeaching Teaching GUI - prototype

TinnR Resources of Tinn-R GUI/Editor for R Environment

traitr An interface for creating GUIs modeled in part after traits UI module for python

gooJSON Google JSON Data Interpreter for R

googleVis Interface between R and the Google Visualisation API

googlebigquery R client library for communicating with the Google Bigquery service

DBI R Database Interface

dbConnect Provides a graphical user interface to connect with databases that use MySQL

filehash Simple key-value database

filehashSQLite Simple key-value database using SQLite

RMySQL R interface to the MySQL database

RODBC ODBC Database Access

ROracle Oracle database interface for R

ROracleUI Convenient Tools for Working with Oracle Databases

RPostgreSQL R interface to the PostgreSQL database system

RpgSQL DBI/RJDBC interface to PostgreSQL Database

sas7bdat SAS Database Reader (experimental)

hapassoc Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

lemma Laplace approximated EM Microarray Analysis

cplm Monte Carlo EM algorithms and Bayesian methods for fitting Tweedie compound Poisson linear models

# 更多 R 套件

- http://cran.r-project.org/web/packages/available_packages_by_name.html (3258 筆)

ACCLMA ACC & LMA Graph Plotting

ADGofTest Anderson-Darling GoF test

ADM3 An Interpretation of the ADM method - automated detection algorithm

ADaCGH Analysis of data from aCGH experiments

AER Applied Econometrics with R

AGSDest Estimation in adaptive group sequential trials

AICcmodavg Model selection and multimodel inference based on (Q)AIC(c)

AIGIS Areal Interpolation for GIS data

AIM AIM: adaptive index model

ALS multivariate curve resolution alternating least squares (MCR-ALS)

AMA Anderson-Moore Algorithm

AMORE A MORE flexible neural network package

APSIMBatch Analysis the output of Apsim software

AUCRF Variable Selection with Random Forest and the Area Under the Curve

AcceptanceSampling Creation and evaluation of Acceptance Sampling Plans

AdMit Adaptive Mixture of Student-t distributions

AdaptFit Adaptive Semiparametic Regression

Agreement Statistical Tools for Measuring Agreement

AlgDesign Algorithmic Experimental Design

AllPossibleSpellings Computes all of a word's possible spellings

Amelia Amelia II: A Program for Missing Data

AnalyzeFMRI Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format

Animal Analyze time-coded animal behavior data

AnnotLists Data extraction tool from annotations files

AquaEnv AquaEnv - an integrated development toolbox for aquatic chemical model generation

ArDec Time series autoregressive-based decomposition

aCGH.Spline Robust spline interpolation for dual color array comparative genomic hybridisation data

abc Tools for Approximate Bayesian Computation (ABC)

abd The Analysis of Biological Data

abind Combine multi-dimensional arrays

abn Multidimensional Bayesian Regression

accuracy Tools for testing and improving accuracy of statistical results

acepack ace() and avas() for selecting regression transformations

actuar Actuarial functions

ada ada: an R package for stochastic boosting

adabag Applies Adaboost.M1 and Bagging

adaptTest Adaptive two-stage tests

adaptivetau Tau-leaping stochastic simulation

ade4 Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences

ade4TkGUI ade4 Tcl/Tk Graphical User Interface

adegenet adegenet: an R package for the exploratory analysis of genetic and genomic data

adehabitat Analysis of habitat selection by animals

adehabitatHR Home range Estimation

adehabitatHS Analysis of habitat selection by animals

adehabitatLT Analysis of animal movements

adehabitatMA Tools to Deal with Raster Maps

adephylo adephylo: exploratory analyses for the phylogenetic comparative method

adimpro Adaptive Smoothing of Digital Images

adk Anderson-Darling K-Sample Test and Combinations of Such Tests

adlift An adaptive lifting scheme algorithm

ads Spatial point patterns analysis

afc Calculate afc

afmtools Estimation, Diagnostic and Forecasting Functions for ARFIMA models

agilp Extracting and preprocessing Agilent express arrays

agricolae Statistical Procedures for Agricultural Research

agridat Agricultural datasets

agsemisc Miscellaneous plotting and utility functions

ahaz Regularization for semiparametric additive hazards regression

akima Interpolation of irregularly spaced data

alabama Constrained nonlinear optimization

allan Automated Large Linear Analysis Node

allanvar Allan Variance Analysis

allelic A fast, unbiased and exact allelic exact test

alphahull Generalization of the convex hull of a sample of points in the plane

alr3 Data to accompany Applied Linear Regression 3rd edition

amap Another Multidimensional Analysis Package

amba Additive Models for Business Applications

amei Adaptive Management of Epidemiological Interventions

amer Additive mixed models with lme4

anacor Simple and Canonical Correspondence Analysis

anaglyph 3D Anaglyph Plots

analogue Analogue and weighted averaging methods for palaeoecology

anapuce Tools for microarray data analysis

anchors Statistical analysis of surveys with anchoring vignettes

andrews Andrews curves

anesrake ANES Raking Implementation

animation A Gallery of Animations in Statistics and Utilities to Create Animations

anm Analog model for downscaling

ant Version of ant specific to R

aod Analysis of Overdispersed Data

apTreeshape Analyses of Phylogenetic Treeshape

apcluster Affinity Propagation Clustering

ape Analyses of Phylogenetics and Evolution

aplpack Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions

approximator Bayesian prediction of complex computer codes

apsrtable apsrtable model-output formatter for social science

apt Asymmetric Price Transmission (apt)

aqfig Functions to help display air quality model output and monitoring data

aqp Algorithms for Quantitative Pedology

aratio Assessment ratio analysis

archetypes Archetypal Analysis

ares Environment air pollution epidemiology: a library for time series analysis

arf3DS4 Activated Region Fitting, fMRI data analysis (3D)

argosfilter Argos locations filter

arm Data Analysis Using Regression and Multilevel/Hierarchical Models

aroma.affymetrix Analysis of large Affymetrix microarray data sets

aroma.apd A probe-level data file format used by aroma.affymetrix [DEPRECATED]

aroma.cn Copy-number analysis of large microarray data sets

aroma.core Core methods and classes used by aroma.* package part of The Aroma Project

aroma.light Light-weight methods for normalization and visualization of microarray data using only basic R data types

arrayImpute Missing imputation for microarray data

arrayMissPattern Exploratory analysis of Missing patterns for microarray data

arrayhelpers Convenience functions for arrays

ars Adaptive Rejection Sampling

arules Mining Association Rules and Frequent Itemsets

arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules

arulesSequences Mining frequent sequences

arulesViz arulesViz - Visualizing Association Rules and Frequent Itemsets

asbio A collection of statistical tools for biologists

ascii Export R objects to several markup languages

asd Simulations for adaptive seamless designs

ash David Scott's ASH routines

aspace A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns

aspect Aspects of Multivariables

assist A Suite of S-Plus Functions Implementing Smoothing Splines

aster Aster Models

aster2 Aster Models

asympTest Asymptotic statistic

asypow Calculate Power Utilizing Asymptotic Likelihood Ratio Methods

atmi Analysis of technical market indicators

audio Audio Interface for R

audit Bounds for Accounting Populations

auteur Bayesian sampler of the trait-evolutionary process

automap Automatic interpolation package

aws Adaptive Weights Smoothing

aylmer A generalization of Fisher's exact test

B2Z Bayesian Two-Zone Model

BACCO Bayesian Analysis of Computer Code Output (BACCO)

BAMD Bayesian Association Model for Genomic Data with Missing Covariates

BARD Better Automated ReDistricting

BAS Bayesian Model Averaging using Bayesian Adaptive Sampling

BAYSTAR On Bayesian analysis of Threshold autoregressive model (BAYSTAR)

BB Solving and Optimizing Large-Scale Nonlinear Systems

BBMM Brownian bridge movement model for estimating the movement path of an animal using discrete location data

BCA Business and Customer Analytics

BCBCSF Bias-corrected Bayesian Classification with Selected Features

BCE Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data

BGSIMD Block Gibbs Sampler with Incomplete Multinomial Distribution

BHH2 Useful Functions for Box, Hunter and Hunter II

BLCOP Black-Litterman and copula-opinion pooling frameworks

BLR Bayesian Linear Regression

BMA Bayesian Model Averaging

BMN The pseudo-likelihood method for pairwise binary markov networks

BMS Bayesian Model Averaging Library

BPHO Bayesian Prediction with High-order Interactions

BSDA Basic Statistics and Data Analysis

BSagri Statistical methods for safety assessment in agricultural field trials

BTSPAS Bayesian Time-Strat. Population Analysis

BaBooN Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data

BaM Functions and datasets for books by Jeff Gill

Barnard Barnard's Unconditional Test

BayHap Bayesian analysis of haplotype association using Markov Chain Monte Carlo

BayHaz R Functions for Bayesian Hazard Rate Estimation

BayesDA Functions and Datasets for the book "Bayesian Data Analysis"

BayesQTLBIC Bayesian multi-locus QTL analysis based on the BIC criterion

BayesTree Bayesian Methods for Tree Based Models

BayesValidate BayesValidate Package

BayesX R Utilities Accompanying the Software Package BayesX

Bchron Bayesian chronologies via compound Poisson-Gamma processes

Benchmarking Benchmark and frontier analysis using DEA and SFA

Bergm Bayesian inference for exponential random graph models

Bessel Bessel – Bessel Functions Computations and Approximations

Bhat General likelihood exploration

BiGGR Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs

BiasedUrn Biased Urn model distributions

BioIDMapper Mapping between BioIDs

BioMark Find biomarkers in two-class discrimination problems

BioPhysConnectoR BioPhysConnectoR

BioStatR Initiation à la Statistique avec R

Biodem Biodemography functions

BiodiversityR GUI for biodiversity and community ecology analysis

Biograph Explore life histories

BiomarkeR Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a method to infer networks

BiplotGUI Interactive Biplots in R

BlakerCI Blaker's binomial confidence limits

Bmix Bayesian Sampling for Stick-breaking Mixtures

BoSSA a Bunch of Structure and Sequence Analysis

Bolstad Bolstad functions

Bolstad2 Bolstad functions

BoolNet Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks

BootPR Bootstrap Prediction Intervals and Bias-Corrected Forecasting

Boruta Boruta – a tool for finding significant attributes in information systems

BradleyTerry Bradley-Terry Models – this package is now deprecated in favour of 'BradleyTerry2'

BradleyTerry2 Bradley-Terry models

Brobdingnag Very large numbers in R

BsMD Bayes Screening and Model Discrimination

backfitRichards Backfitted independent values of Richards curves

backtest Exploring portfolio-based conjectures about financial instruments

bamdit Bayesian Meta-Analysis of diagnostic test data

barcode Barcode distribution plots

bark Bayesian Additive Regresssion Kernels

base64 Base 64 encoder/decoder

baseline Baseline Correction of Spectra

basicspace A Package to Recover a Basic Space from Issue Scales

batade HTML reports and so on

batch Batching Routines in Parallel and Passing Command-Line Arguments to R

bayesDem Graphical User Interface for bayesTFR and bayesLife

bayesGARCH Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations

bayesLife Bayesian Projection of Life Expectancy

bayesQR Bayesian quantile regression

bayesSurv Bayesian Survival Regression with Flexible Error and Random Effects Distributions

bayesTFR Bayesian Fertility Projection

bayesclust Tests/Searches for significant clusters in genetic data

bayescount Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC

bayesm Bayesian Inference for Marketing/Micro-econometrics

bayesmix Bayesian Mixture Models with JAGS

bayespack Numerical Integration for Bayesian Inference

bayespref Hierarchical Bayesian analysis of ecological count data

bbemkr Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error

bbmle Tools for general maximum likelihood estimation

bclust Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data

bcool Bringing to light significant Columns correlated with Organism Labels

bcp A Package for Performing a Bayesian Analysis of Change Point Problems

bcv Cross-Validation for the SVD (Bi-Cross-Validation)

bdpv Inference and design for predictive values in binary diagnostic tests

bdsmatrix Routines for Block Diagonal Symmetric matrices

beadarrayMSV Analysis of Illumina BeadArray SNP data including MSV markers

beanplot Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)

bear Average bioequivalence and bioavailability data analysis tool

beeswarm The bee swarm plot, an alternative to stripchart

belief Contains basic functions to manipulate belief functions and associated mass assignments

benchden 28 benchmark densities from Berlinet/Devroye (1994)

benchmark Benchmark Experiments Toolbox

bentcableAR Bent-Cable Regression for Independent Data or Autoregressive Time Series

ber Batch Effects Removal

bestglm Best Subset GLM

betaper Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data

betareg Beta Regression

bethel Bethel's algorithm

bfast BFAST: Breaks For Additive Seasonal and Trend

bfp Bayesian Fractional Polynomials

bgmm Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling

biGraph Analysis Toolbox For Bipartite Graphs

biOps Image processing and analysis

biOpsGUI GUI for Basic image operations

bibtex bibtex parser

biclust BiCluster Algorithms

bifactorial Inferences for bi- and trifactorial trial designs

biganalytics A library of utilities for big.matrix objects of package bigmemory

biglars Scalable Least-Angle Regression and Lasso

biglm bounded memory linear and generalized linear models

bigmemory Manage massive matrices with shared memory and memory-mapped files

bigtabulate table-, tapply-, and split-like functionality for matrix and big.matrix objects

bild bild: a package for BInary Longitudinal Data

bimetallic Power for SNP analyses using silver standard cases

binGroup Evaluation and experimental design for binomial group testing

binMto Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions

binarySimCLF Simulates Correlated Binary Data

bindata Generation of Artificial Binary Data

binhf Haar-Fisz functions for binomial data

binom Binomial Confidence Intervals For Several Parameterizations

binomSamSize Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling

binomTools Performing diagnostics on binomial regression models

bio.infer Predict environmental conditions from biological observations

biopara Self-contained parallel system for R

bios2mds From BIOlogical Sequences to MultiDimensional Scaling

bipartite Visualising bipartite networks and calculating some (ecological) indices

bise Auxiliary functions for phenological data analysis

biseVec Auxiliary functions for phenological data analysis

bisoreg Bayesian Isotonic Regression with Bernstein Polynomials

bit A class for vectors of 1-bit booleans

bitops Functions for Bitwise operations

bivarRIpower Sample size calculations for bivariate longitudinal data

biwt Functions to compute the biweight mean vector and covariance & correlation matrices

blender Analyze biotic homogenization of landscapes

blighty United Kingdom coastlines

blm Binomial linear and linear-expit regression

blme Bayesian Linear Mixed-Effects models

blockTools Block, assign, and diagnose potential interference in randomized experiments

blockmodeling An R package for Generalized and classical blockmodeling of valued networks

blockrand Randomization for block random clinical trials

bmd Benchmark dose analysis for dose-response data

bmem Mediation analysis with missing data using bootstrap

bnlearn Bayesian network structure learning, parameter learning and inference

boa Bayesian Output Analysis Program (BOA) for MCMC

boolean Boolean Binary Response Models

boolfun Cryptographic Boolean Functions

boot Bootstrap Functions (originally by Angelo Canty for S)

bootRes Bootstrapped Response and Correlation Functions

bootStepAIC Bootstrap stepAIC

bootruin A bootstrap test for the probability of ruin in the classical risk process

bootspecdens Testing equality of spectral densities

bootstrap Functions for the Book "An Introduction to the Bootstrap"

bpca Biplot of Multivariate Data Based on Principal Components Analysis

bqtl Bayesian QTL mapping toolkit

brainwaver Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory

brew Templating Framework for Report Generation

brglm Bias reduction in binomial-response GLMs

bs Package for the Birnbaum-Saunders distribution

bsml Basis Selection from Multiple Libraries

bspec Bayesian spectral inference

bst Gradient Boosting

bujar Buckley-James Regression for Survival Data with High-Dimensional Covariates

bvls The Stark-Parker algorithm for bounded-variable least squares

bvpSolve Solvers for boundary value problems of ordinary differential equations

CADFtest This package performs the CADF unit root test proposed in Hansen (1995)

CADStat Provides a GUI to several statistical methods useful for causal assessment

CAVIAR Cambial Activity and wood formation data processing, visualisation and analysis using R

CCA Canonical correlation analysis

CCM Correlation classification method (CCM)

CCMtools Clustering through "Correlation Clustering Model" (CCM) and cluster analysis tools

CDFt Statistical downscaling through CDF-transform

CDNmoney Components of Canadian Monetary and Credit Aggregates

CDVine Statistical inference of C- and D-vine copulas

CFL Compensatory Fuzzy Logic

CGIwithR CGI Programming in R

CGene Causal Genetic Analysis

CHCN Canadian Historical Climate Network

CHNOSZ Chemical Thermodynamics and Activity Diagrams

CHsharp Choi and Hall Clustering in 3d

CITAN CITation ANalysis toolpack

CLSOCP A smoothing Newton method SOCP solver

CMC Cronbach-Mesbah Curve

CNVassoc Association analysis of CNV data

COMPoissonReg Conway-Maxwell Poisson (COM-Poisson) Regression

COP Variables selection for index models via correlation pursuit

CORElearn CORElearn - classification, regression, feature evaluation and ordinal evaluation

CORREP Multivariate Correlation Estimator and Statistical Inference Procedures

COSINE COndition SpecIfic sub-NEtwork

COUNT Functions, data and code for count data

COZIGAM Constrained and Unconstrained Zero-Inflated Generalized Additive Models with Model Selection Criterion

CPE Concordance Probability Estimates in Survival Analysis

CRTSize Sample Size Estimation Functions for Cluster Randomized Trials

CTT Classical Test Theory Functions

CVThresh Level-Dependent Cross-Validation Thresholding

Cairo R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output

CalciOMatic Automatic Calcium Imaging Analysis

CarbonEL Carbon Event Loop

CatDyn Fishery Stock Assessment by Catch Dynamic Models

CausalGAM Estimation of Causal Effects with Generalized Additive Models

CellularAutomaton One-Dimensional Cellular Automata

ChainLadder Mack, Bootstrap, Munich, Multivariate-chain-ladder, Clark methods and generalized linear models for insurance claims reserving

ChemoSpec Exploratory Chemometrics for Spectroscopy

ChemometricsWithR Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences

ChemometricsWithRData Data for package ChemometricsWithR

CircNNTSR CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models

CircStats Circular Statistics, from "Topics in circular Statistics" (2001)

CityPlot Visualization of structure and contents of a database

Ckmeans.1d.dp Optimal distance-based clustering for one-dimensional data

ClinicalRobustPriors Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners

ClustOfVar Clustering of variables

CoCo Graphical modelling by log-linear models (an interface from R to CoCo)

CoCoCg Graphical modelling by CG regressions

CoCoGraph Interactive and dynamic graphs for the CoCo objects

CollocInfer Collocation Inference for Dynamic Systems

CombMSC Combined Model Selection Criteria

CommonJavaJars Useful libraries for building a Java based GUI under R

CompQuadForm Distribution function of quadratic forms in normal variables

CompRandFld Composite-likelihood based Analysis of Random Fields

CompareTests Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens

CompetingRiskFrailty Competing Risk Model with Frailties for Right Censored Survival Data

ConvCalendar Converts dates between calendars

ConvergenceConcepts Seeing convergence concepts in action

CorrBin Nonparametrics with clustered binary data

Covpath COVPATH Package

CoxBoost Cox models by likelihood based boosting for a single survival endpoint or competing risks

Cprob Conditional probability function of a competing event

CreditMetrics Functions for calculating the CreditMetrics risk model

Cubist Rule- and Instance-Based Regression Modeling

CvM2SL1Test L1-version of Cramer-von Mises Two Sample Tests

CvM2SL2Test Cramer-von Mises Two Sample Tests

c3net Infering large-scale gene networks with C3NET

cMonkey cMonkey intgrated biclustering algorithm

ca Simple, Multiple and Joint Correspondence Analysis

caGUI A Tcl/Tk GUI for the functions in the ca package

caMassClass Processing & Classification of Protein Mass Spectra (SELDI) Data

caTools Tools: moving window statistics, GIF, Base64, ROC AUC, etc

cacheSweave Tools for caching Sweave computations

cacher Tools for caching and distributing statistical analyses

cairoDevice Cairo-based cross-platform antialiased graphics device driver

calib Statistical tool for calibration of plate based bioassays

calibrate Calibration of Scatterplot and Biplot Axes

calibrator Bayesian calibration of complex computer codes

candisc Generalized Canonical Discriminant Analysis

canvas R graphics device targeting the HTML canvas element

caper Comparative Analyses of Phylogenetics and Evolution in R

car Companion to Applied Regression

care High-Dimensional Regression and CAR Score Variable Selection

caret Classification and Regression Training

caroline A Collection of General Purpose Functions for R

caschrono Séries temporelles avec R - Méthodes et cas

caspar Clustered and sparse regression (CaSpaR)

cat Analysis of categorical-variable datasets with missing values

catR Procedures to generate IRT adaptive tests (CAT)

catmap Case-control And Tdt Meta-Analysis Package

catnet Categorical Bayesian Network Inference

catspec Special models for categorical variables

cba Clustering for Business Analytics

cccd Class Cover Catch Digraphs

ccems Combinatorially Complex Equilibrium Model Selection

ccgarch Conditional Correlation GARCH models

cclust Convex Clustering Methods and Clustering Indexes

cda Coupled dipole approximation

cellVolumeDist Functions to fit cell volume distributions and thereby estimate cell growth rates and division times

cem CEM: Software for Coarsened Exact Matching

cems Conditional expectatation manifolds

censReg Censored Regression (Tobit) Models

cfa Analysis of configuration frequencies (CFA)

cg Comparison of groups

cgdsr R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)

cggd Continuous Generalized Gradient Descent

cgh Microarray CGH analysis using the Smith-Waterman algorithm

cghFLasso Detecting hot spot on CGH array data with fused lasso regression

cghseg Segmentation methods for array CGH analysis

changeLOS Change in LOS

changepoint An R package for changepoint analysis

charlson Converts listwise icd9 data into comorbidity count and Charlson Index

cheb Discrete Linear Chebyshev Approximation

chemCal Calibration functions for analytical chemistry

chemometrics Multivariate Statistical Analysis in Chemometrics

cherry Multiple testing methods for exploratory research

choplump Choplump tests

chplot Augmented Convex Hull Plots

chron Chronological objects which can handle dates and times

cimis R package for retrieving data from CIMIS

circular Circular Statistics

citbcmst Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data

clValid Validation of Clustering Results

clac Clust Along Chromosomes, a method to call gains/losses in CGH array data

class Functions for Classification

classGraph Construct Graphs of S4 Class Hierarchies

classInt Choose univariate class intervals

classifly Explore classification models in high dimensions

clim.pact Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data

climatol Some Tools for Climatology: series homogenization, plus windrose and Walter&Lieth diagrams

clime Constrained L1-minimization for Inverse (covariance) Matrix Estimation

clinfun Clinical Trial Design and Data Analysis Functions

clinsig Clinical significance functions

clpAPI R Interface to C API of COIN-OR Clp

clue Cluster ensembles

clues Clustering Method Based on Local Shrinking

clustTool GUI for clustering data with spatial information

cluster Cluster Analysis Extended Rousseeuw et al

clusterCons Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter

clusterGeneration random cluster generation (with specified degree of separation)

clusterPower Power calculations for cluster-randomized crossover trials

clusterRepro Reproducibility of gene expression clusters

clusterSim Searching for optimal clustering procedure for a data set

clusterfly Explore clustering interactively using R and GGobi

clustsig Significant Cluster Analysis

clustvarsel Variable Selection for Model-Based Clustering

clv Cluster Validation Techniques

cmaes Covariance Matrix Adapting Evolutionary Strategy

cmm Categorical Marginal Models

cmprsk Subdistribution Analysis of Competing Risks

cmprskContin Continuous mark-specific relative risks for two groups

cmrutils Misc Functions of the Center for the Mathematical Research

cncaGUI Canonical Non-symmetrical Correspondence Analysis in R

coarseDataTools A collection of functions to help with analysis of coarse infectious disease data

cobs COBS – Constrained B-splines (Sparse matrix based)

cobs99 Constrained B-splines – outdated 1999 version

cocorresp Co-correspondence analysis methods

coda Output analysis and diagnostics for MCMC

codep Multiscale Codependence Analysis

codetools Code Analysis Tools for R

coenoflex Gradient-Based Coenospace Vegetation Simulator

coin Conditional Inference Procedures in a Permutation Test Framework

colbycol Read big text files column by column, sometimes much bigger than available RAM, into R

colcor Tests for column correlation in the presence of row correlation

colorRamps Builds color tables

colorspace Color Space Manipulation

combinat combinatorics utilities

compHclust Complementary Hierarchical Clustering

compOverlapCorr Comparing overlapping correlation coefficients

compare Comparing Objects for Differences

compareGroups descriptives by groups

compeir Event-specific incidence rates for competing risks data

compoisson Conway-Maxwell-Poisson Distribution

compositions Compositional Data Analysis

compute.es Compute Effect Sizes

concor Concordance

concord Concordance and reliability

concreg Concordance regression

cond Approximate conditional inference for logistic and loglinear models

condGEE Parameter estimation in conditional GEE for recurrent event gap times

conf.design Construction of factorial designs

confReg Confidence Estimators for Individual Regression Predictions

constrainedKriging Constrained, covariance-matching constrained and universal point or block kriging

contfrac Continued fractions

contrast A collection of contrast methods

convexHaz Nonparametric MLE/LSE of convex hazard

copBasic Basic Copula Functions

copas Statistical methods to model and adjust for bias in meta-analysis

copula Multivariate dependence with copulas

copulaedas Estimation of Distribution Algorithms Based on Copula Theory

corcounts Generate correlated count random variables

corpcor Efficient Estimation of Covariance and (Partial) Correlation

corpora Statistics for corpus linguists

corrgram Plot a correlogram

corrperm Permutation Tests of Correlation with Repeated Measurements

corrplot visualization of a correlation matrix

corrsieve CorrSieve

cosso COSSO, adaptive COSSO, variable selection for nonparametric smoothing spline models

costat Time series costationarity determination and tests of stationarity

countrycode Create and manipulate data frames that contain country names or country coding schemes

covRobust Robust Covariance Estimation via Nearest Neighbor Cleaning

coxme Mixed Effects Cox Models

coxphf Cox regression with Firth's penalized likelihood

coxphw Weighted Cox regression

coxrobust Robust Estimation in Cox Model

cplexAPI R Interface to C API of IBM ILOG CPLEX

cplm Monte Carlo EM algorithms and Bayesian methods for fitting Tweedie compound Poisson linear models

cramer Multivariate nonparametric Cramer-Test for the two-sample-problem

crank Completing ranks

crantastic Various R tools for http://crantastic.org/

crawl Fit continuous-time correlated random walk models for animal movement data

crimCV Group-Based Modelling of Longitudinal Data

crmn CCMN and other noRMalizatioN methods for metabolomics data

crossdes Design and Randomization in Crossover Studies

crosshybDetector Detection of cross-hybridization events in microarray experiments

crossmatch The cross-match test

crrSC Competing risks regression for Stratified and Clustered data

crs Categorical Regression Splines

cshapes CShapes Dataset and Utilities

cslogistic Conditionally Specified Logistic Regression

ctarma Estimation and simulation if carma(p,q)

cthresh Complex Wavelet Denoising software

cts Continuous Time Autoregressive Models

ctv CRAN Task Views

cubature Adaptive multivariate integration over hypercubes

cudaBayesreg CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis

cudaBayesregData Data sets for the examples used in the package "cudaBayesreg"

cumSeg Change point detection in genomic sequences

curvHDR curvHDR filtering

curvetest Test the equality of two curves, or one curve with 0

cusp Cusp Catastrophe Model Fitting Using Maximum Likelihood

cwhmisc CWH's functions for maths, plotting, printing, statistics, strings, and tools

cyclones Cyclone identification

DAAG Data Analysis And Graphics data and functions

DAAGbio Data Sets and Functions, for demonstrations with expression arrays and gene sequences

DAAGxtras Data Sets and Functions, supplementary to DAAG

DAGGER Consensus genetic maps

DAKS Data Analysis and Knowledge Spaces

DALY DALY Calculator - A GUI for stochastic DALY calculation in R

DAMisc Dave Armstrong's Miscellaneous Functions

DART Denoising Algorithm based on Relevance network Topology

DATforDCEMRI Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI

DBGSA methods of distance-based gene set functional enrichment analysis

DBI R Database Interface

DCGL Differential Coexpression Analysis of Gene Expression Microarray Data

DCluster Functions for the detection of spatial clusters of diseases

DDHFm Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)

DECIDE DEComposition of Indirect and Direct Effects

DEMEtics Evaluating the genetic differentiation between populations based on Gst and D values

DEoptim Global optimization by differential evolution

DIME DIME (Differential Identification using Mixture Ensemble)

DMwR Functions and data for "Data Mining with R"

DNAtools Tools for analysing forensic genetic DNA data

DOBAD Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains

DOSim Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for each module

DPpackage Bayesian Nonparametric and Semiparametric Analysis

DRI DR-Integrator

DSpat Spatial modelling for distance sampling data

DTDA Doubly truncated data analysis

DTK Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes

Daim Diagnostic accuracy of classification models

DatABEL file-based access to large matrices stored on HDD in binary format

Davies The Davies quantile function

Deducer Deducer

DeducerExtras Additional dialogs and functions for Deducer

DeducerMMR A Deducer plugin for moderated multiple regressions and simple slopes analysis

DeducerPlugInExample Deducer Plug-in Example

DeducerPlugInScaling Reliability and factor analysis plugin

Defaults Create Global Function Defaults

Depela Depela

DescribeDisplay R interface to DescribeDisplay (GGobi plugin)

Design Design Package

DesignPatterns Design Patterns in R to build reusable object-oriented software

Devore5 Data sets from Devore's "Prob and Stat for Eng (5th ed)"

Devore6 Data sets from Devore's "Prob and Stat for Eng (6th ed)"

Devore7 Data sets from Devore's "Prob and Stat for Eng (7th ed)"

DiagTest3Grp Diagnostic test summary measures for three ordinal groups

DiagnosisMed Diagnostic test accuracy evaluation for medical professionals

DiceDesign Designs of Computer Experiments

DiceEval Construction and evaluation of metamodels

DiceKriging Kriging methods for computer experiments

DiceOptim Kriging-based optimization for computer experiments

DiceView Plot methods for computer experiments design and surrogate

DierckxSpline R companion to "Curve and Surface Fitting with Splines"

DistributionUtils Distribution Utilities

DiversitySampler Functions for re-sampling a community matrix to compute diversity indices at different sampling levels

DoE.base Full factorials, orthogonal arrays and base utilities for DoE packages

DoE.wrapper Wrapper package for design of experiments functionality

DoseFinding Planning and Analyzing Dose Finding experiments

dae Functions useful in the design and ANOVA of experiments

dafs Data analysis for forensic scientists

dagR R functions for directed acyclic graphs

darts Statistical Tools to Analyze Your Darts Game

data.table Extension of data.frame for fast indexing, fast ordered joins and fast grouping

dataframes2xls dataframes2xls writes data frames to xls files

datamap A system for mapping foreign objects to R variables and environments

dataview Human readable data presentation

date Functions for handling dates

dbConnect Provides a graphical user interface to connect with databases that use MySQL

dbEmpLikeGOF Goodness-of-fit and two sample comparison tests using sample entropy

dblcens Compute the NPMLE of distribution from doubly censored data

dbstats Distance-based statistics (dbstats)

dcemriS4 A Package for Medical Image Analysis (S4 implementation)

dcens Doubly censoring estimation

dclone Data Cloning and MCMC Tools for Maximum Likelihood Methods

dcv Conventional Cross-validation statistics for climate-growth model

ddepn Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data

ddesolve Solver for Delay Differential Equations

ddst Data driven smooth test

deSolve General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE), differential algebraic equations (DAE), and delay differential equations (DDE)

deal Learning Bayesian Networks with Mixed Variables

debug MVB's debugger for R

decon Deconvolution Estimation in Measurement Error Models

deducorrect Deductive correction of simple rounding, typing and sign errors

degenes Detection of differentially expressed genes

degreenet Models for Skewed Count Distributions Relevant to Networks

deldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellation

delftfews delftfews R extensions

delt Estimation of multivariate densities with adaptive histograms

demography Forecasting mortality, fertility, migration and population data

denpro Visualization of multivariate, functions, sets, and data

denstrip Density strips and other methods for compactly illustrating distributions

depmix Dependent Mixture Models

depmixS4 Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4

depth Depth functions tools for multivariate analysis

depthTools Depth Tools Package

descr Descriptive statistics

desirability Desirabiliy Function Optimization and Ranking

desire Desirability functions

detrendeR Start the detrendeR Graphical User Interface (GUI)

devEMF EMF graphics output device

devtools Tools to make developing R code easier

dfcrm Dose-finding by the continual reassessment method

dfoptim Derivative-free Optimization

dglm Double generalized linear models

dgof Discrete Goodness-of-Fit Tests

diagram Functions for visualising simple graphs (networks), plotting flow diagrams

diamonds Analysis and sampling grids from diamond partitions

dice Calculate probabilities of various dice-rolling events

dichromat Color schemes for dichromats

dicionariosIBGE Dictionaries for reading survey microdata from IBGE

dielectric Defines some physical constants and dielectric functions commonly used in optics, plasmonics

difR Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics

diff Statistics: What's the Difference?

diffractometry Baseline identification and peak decomposition for x-ray diffractograms

diffusionMap Diffusion map

digeR GUI tool for analyzing 2D DIGE data

digest Create cryptographic hash digests of R objects

digitize digitize : a plot digitizer in R

diptest Hartigan's dip test statistic for unimodality - corrected code

directlabels Direct labels for multicolor plots in lattice or ggplot2

dirmult Estimation in Dirichlet-Multinomial distribution

discretization Data preprocessing, discretization for classification

diseasemapping Calculate observed and expected disease incidence counts from a case file and population data

dismo Species distribution modeling

dispmod Dispersion models

distory Distance Between Phylogenetic Histories

distr Object oriented implementation of distributions

distrDoc Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse

distrEllipse S4 classes for elliptically contoured distributions

distrEx Extensions of package distr

distrMod Object oriented implementation of probability models

distrSim Simulation classes based on package distr

distrTEst Estimation and Testing classes based on package distr

distrTeach Extensions of package distr for teaching Stochastics/Statistics in secondary school

divagis Provides tools for quality checks of georeferenced plant species accessions

diveMove Dive analysis and calibration

diversitree diversitree: comparative phylogenetic tests of diversification

divisors Find the divisors of a number

dixon Nearest Neighbour Contingency Table Analysis

dlm Bayesian and Likelihood Analysis of Dynamic Linear Models

dlmap Detection Localization Mapping for QTL

dlmodeler Generalized Dynamic Linear Modeler

dlnm Distributed Lag Non-linear Models

dmt Dependency Modeling Toolkit

doBy Groupwise summary statistics, general linear contrasts, LSMEANS (least-squares-means), and other utilities

doMC Foreach parallel adaptor for the multicore package

doMPI Foreach parallel adaptor for the Rmpi package

doRedis Foreach parallel adapter for the rredis package

doSMP Foreach parallel adaptor for the revoIPC package

doSNOW Foreach parallel adaptor for the snow package

dpa Dynamic Path Approach

dplR Dendrochronology Program Library in R

dpmixsim Dirichlet Process Mixture model simulation for clustering and image segmentation

dr Methods for dimension reduction for regression

drawExpression Visualising R syntax through graphics

drc Analysis of dose-response curves

drfit Dose-response data evaluation

drm Regression and association models for repeated categorical data

dse Dynamic Systems Estimation (time series package)

dse1 DSE (unbundled transition package)

dse2 DSE (unbundled transition package)

dti Analysis of diffusion weighted imaging (DWI) data

dtt Discrete Trigonometric Transforms

dtw Dynamic Time Warping algorithms

dummies Create dummy/indicator variables flexibly and efficiently

dvfBm Discrete variations of a fractional Brownian motion

dyad Analysis of dyadic observational data

dyn Time Series Regression

dynCorr Dynamic Correlation Package

dynGraph Interactive visualization of dataframes and factorial planes

dynaTree Dynamic trees for learning and design

dynamicGraph dynamicGraph

dynamicTreeCut Methods for detection of clusters in hierarchical clustering dendrograms

dynamo Dynamic Models

dynlm Dynamic Linear Regression

EDR Estimation of the effective dimension reduction (EDR) space

EMA Easy Microarray data Analysis

EMD Empirical Mode Decomposition and Hilbert Spectral Analysis

EMJumpDiffusion EM-Algorithm for Jump Diffusion processes

EMT Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data

ENmisc Neuwirth miscellaenous

EQL Extended-Quasi-Likelihood-Function (EQL)

ESPRESSO Power Analysis and Sample Size Calculation

ETC Equivalence to control

EVER Estimation of Variance by Efficient Replication

EbayesThresh Empirical Bayes Thresholding and Related Methods

Ecdat Data sets for econometrics

EcoHydRology A community modeling foundation for Eco-Hydrology

ElectroGraph Enhanced routines for plotting and analyzing valued relational data

ElemStatLearn Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman

EnQuireR A package dedicated to questionnaires

EngrExpt Data sets from "Introductory Statistics for Engineering Experimentation"

Epi A package for statistical analysis in epidemiology

EquiNorm Normalize expression data using equivalently expressed genes

EstCRM Calibrating Parameters for the Samejima's Continuous IRT Model

EuclideanMaps Displays Euclidean Maps

EvalEst Dynamic Systems Estimation - extensions

ExPD2D Exact Computation of Bivariate Projection Depth Based on Fortran Code

ExomeCNV Detect CNV and LOH from Exome Sequecing Data

e1071 Misc Functions of the Department of Statistics (e1071), TU Wien

eRm Extended Rasch Modeling

eVenn eVenn: A powerful tool to compare lists and draw Venn diagrams

eaf Plots of the Empirical Attainment Function

earth Multivariate Adaptive Regression Spline Models

eba Elimination-by-Aspects (EBA) Models

ebal Entropy reweighting to create balanced samples

ebdbNet Empirical Bayes Estimation of Dynamic Bayesian Networks

ecespa Functions for spatial point pattern analysis

eco R Package for Ecological Inference in 2x2 Tables

ecodist Dissimilarity-based functions for ecological analysis

ecolMod "A practical guide to ecological modelling - using R as a simulation platform"

ecoreg Ecological regression using aggregate and individual data

edci Edge Detection and Clustering in Images

editrules R package for parsing and manipulating edit rules

edrGraphicalTools Provide tools for dimension reduction methods

edtdbg Integrating R's debug() with Your Text Editor

effects Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and mixed-effects models

egarch EGARCH simulation and fitting

egonet Tool for ego-centric measures in Social Network Analysis

eha Event History Analysis

eiPack eiPack: Ecological Inference and Higher-Dimension Data Management

eigeninv Generates (dense) matrices that have a given set of eigenvalues

eigenmodel Semiparametric factor and regression models for symmetric relational data

el.convex empirical likelihood ratio tests for means

elasticnet Elastic-Net for Sparse Estimation and Sparse PCA

elec Collection of functions for statistical election audits

elec.strat Functions for election audits using stratified random samples

ellipse Functions for drawing ellipses and ellipse-like confidence regions

elliptic elliptic functions

elrm Exact Logistic Regression via MCMC

emdbook Ecological models and data (book support)

emg Exponentially Modified Gaussian (EMG) Distribution

emme2 Read and Write to an EMME/2 databank

emoa Evolutionary Multiobjective Optimization Algorithms

emplik Empirical likelihood ratio for censored/truncated data

emplik2 Empirical-likelihood test (two-sample, censored data)

emu Interface to the Emu Speech Database System

emulator Bayesian emulation of computer programs

endogMNP R Package for Fitting Multinomial Probit Models with Endogenous Selection

energy E-statistics (energy statistics)

english Translate integers into English

enrichvs Enrichment assessment of virtual screening approaches

ensembleBMA Probabilistic Forecasting using Ensembles and Bayesian Model Averaging

entropy Entropy and Mutual Information Estimation

envelope Envelope normality test

epade Easy Plots

epiR Functions for analysing epidemiological data

epibasix Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course

epicalc Epidemiological calculator

epinet A collection of epidemic/network-related tools

epitools Epidemiology Tools

epoc EPoC (Endogenous Perturbation analysis of Cancer)

epsi Edge Preserving Smoothing for Images

eqtl Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis

equate Statistical Methods for Test Score Equating

equivalence Provides tests and graphics for assessing tests of equivalence

erer Empirical Research in Economics with R

ergm Fit, Simulate and Diagnose Exponential-Family Models for Networks

ergm.userterms User-specified terms for the statnet suite of packages

esd4all esd4all

esotericR esotericR articles from lemnica.com

estout Estimates Output

etm Empirical Transition Matrix

evaluate Parsing and evaluation tools that provide more details than the default

evd Functions for extreme value distributions

evdbayes Bayesian Analysis in Extreme Value Theory

evir Extreme Values in R

exact2x2 Exact Conditional Tests and Confidence Intervals for 2x2 tables

exactLoglinTest Monte Carlo Exact Tests for Log-linear models

exactRankTests Exact Distributions for Rank and Permutation Tests

exactci Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases

exactmaxsel Maximally selected statistics for binary response variables - Exact methods

exams Automatic Generation of Standardized Exams for Large-Lecture Courses

expectreg Expectile and Quantile Regression

experiment experiment: R package for designing and analyzing randomized experiments

expert Modeling without data using expert opinion

expm Matrix exponential

expsmooth Data sets from "Forecasting with exponential smoothing"

extRemes Extreme value toolkit

extfunnel Additional Funnel Plot Augmentations

extracat Graphic Extensions for Categorical Data

extremevalues Univariate outlier detection

eyetracking Eyetracking Helper Functions

ez Easy analysis and visualization of factorial experiments

FAMT Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data

FAdist Distributions that are sometimes used in hydrology

FAiR Factor Analysis in R

FAmle Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions

FAwR Functions and Datasets for "Forest Analytics with R"

FBN FISH Based Normalization and Copy Number inference of SNP microarray data

FD Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology

FEST Identification of Family Relations using linked markers

FFD Freedom From Disease

FGN Fractional Gaussian Noise, estimation and simulaton

FITSio FITS (Flexible Image Transport System) utilities

FKF Fast Kalman Filter

FLLat Fused Lasso Latent Feature Model

FME A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis

FNN Fast Nearest Neighbor Search Algorithms and Applications

FRB Fast and Robust Bootstrap

FRBData Download financial data from FRB's website

FSelector Selecting attributes

FTICRMS Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data

FactoClass Combination of Factorial Methods and Cluster Analysis

FactoMineR Multivariate Exploratory Data Analysis and Data Mining with R

Fahrmeir Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz

FeaLect Scores features for Feature seLection

FieldSim Random fields simulations

FinTS Companion to Tsay (2005) Analysis of Financial Time Series

FisherEM Model-Based Clustering in the Fisher Discriminative Subspace

FitAR Subset AR Model Fitting

FitARMA FitARMA: Fit ARMA or ARIMA using fast MLE algorithm

Flury Data Sets from Flury, 1997

ForImp Imputation of missing values through a forward imputation algorithm

Formula Extended Model Formulas

FourierDescriptors Generate images using Fourier descriptors

FrF2 Fractional Factorial designs with 2-level factors

FrF2.catlg128 Complete catalogues of resolution IV 128 run 2-level fractional factorials up to 24 factors

FracSim Simulation of Lévy motions

FunCluster Functional Profiling of Microarray Expression Data

FunNet Integrative Functional Analysis of Transcriptional Networks

FuncMap Hive Plots of R Package Function Calls

fANCOVA Nonparametric Analysis of Covariance

fArma ARMA Time Series Modelling

fAsianOptions EBM and Asian Option Valuation

fAssets Rmetrics - Assets Selection and Modelling

fBasics Rmetrics - Markets and Basic Statistics

fBonds Bonds and Interest Rate Models

fCalendar Chronological and Calendarical Objects

fCertificates fCertificates - Basics of Certificates and Structured Products Valuation

fCopulae Rmetrics - Dependence Structures with Copulas

fEcofin Economic and Financial Data Sets

fExoticOptions Exotic Option Valuation

fExtremes Rmetrics - Extreme Financial Market Data

fGarch Rmetrics - Autoregressive Conditional Heteroskedastic Modelling

fImport Rmetrics - Economic and Financial Data Import

fMultivar Multivariate Market Analysis

fNonlinear Nonlinear and Chaotic Time Series Modelling

fOptions Basics of Option Valuation

fPortfolio Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org

fRegression Regression Based Decision and Prediction

fSeries Financial Time Series Objects

fTrading Technical Trading Analysis

fUnitRoots Trends and Unit Roots

fUtilities Function Utilities

factorQR Bayesian quantile regression factor models

factualR thin wrapper for the Factual.com server API

fairselect Feature Annealed Independence Rules (demo)

fame Interface for FAME time series database

far Modelization for Functional AutoRegressive processes

faraway Functions and datasets for books by Julian Faraway

farmR Mixed Integer model of Arable Farms

fast Implementation of the Fourier Amplitute Sensitivity Test (FAST)

fastICA FastICA Algorithms to perform ICA and Projection Pursuit

fastR Data sets and utilities for Foundations and Applications of Statistics by R Pruim

fastVAR fastVAR

fastcluster Fast hierarchical clustering routines for R and Python

fastmatch Fast match() function

favir Formatted Actuarial Vignettes in R

fbati Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families

fda Functional Data Analysis

fda.usc Functional Data Analysis and Utilities for Statistical Computing (fda.usc)

fdaMixed Functional data analysis in a mixed model framework

fdim Functions for calculating fractal dimension

fdrci Permutation-based FDR Point and Confidence Interval Estimation

fdrtool Estimation and Control of (Local) False Discovery Rates

fds Functional data sets

fdth Frequency Distribution Tables, Histograms and Poligons

feature Feature significance for multivariate kernel density estimation

features Feature Extraction for Discretely-Sampled Functional Data

fechner Fechnerian Scaling of Discrete Object Sets

ff memory-efficient storage of large data on disk and fast access functions

ffbase Basic statistical functions for package ff

ffmanova Fifty-fifty MANOVA

fftw Fast FFT and DCT based on FFTW

fgac Generalized Archimedean Copula

fgui Function GUI

fields Tools for spatial data

filehash Simple key-value database

filehashSQLite Simple key-value database using SQLite

financial Solving financial problems in R

finebalance Approximate fine balance when exact fine balance is not achievable

fingerprint Functions to operate on binary fingerprint data

fisheyeR Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R

fishmethods Fisheries Methods and Models in R

fit4NM NONMEM platform

fitDRC Fitting Density Ratio Classes

fitdistrplus Help to fit of a parametric distribution to non-censored or censored data

flashClust Implementation of optimal hierarchical clustering

flexclust Flexible Cluster Algorithms

flexmix Flexible Mixture Modeling

flsa Path algorithm for the general Fused Lasso Signal Approximator

flubase Baseline of mortality free of influenza epidemics

flux Flux rate calculation from dynamic closed chamber measurements

fma Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)

fmri Analysis of fMRI experiments

fmsb Functions for medical statistics book with some demographic data

foba greedy variable selection

forams Foraminifera and Community Ecology Analyses

foreach Foreach looping construct for R

forecast Forecasting functions for time series

foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ..

forensic Statistical Methods in Forensic Genetics

forensim Statistical tools for the interpretation of forensic DNA mixtures

fork R functions for handling multiple processes

formatR Format R Code Automatically

formula.tools Utilities for working with formulas, expressions, calls and other R objects

fortunes R Fortunes

forward Forward search

fossil Palaeoecological and Palaeogeographical Analysis Tools

fpc Flexible procedures for clustering

fpca Restricted MLE for Functional Principal Components Analysis

fpow Computing the noncentrality parameter of the noncentral F distribution

fpp Data sets for the "Forecasting: principles and practice" workshop by Rob J Hyndman, June 2011

fptdApprox Approximation of first-passage-time densities for diffusion processes

fracdiff Fractionally differenced ARIMA aka ARFIMA(p,d,q) models

fractal Insightful Fractal Time Series Modeling and Analysis

fractaldim Estimation of fractal dimensions

fractalrock Generate fractal time series with non-normal returns distribution

frailtyHL Frailty Models via H-likelihood

frailtypack Frailty models using maximum penalized likelihood estimation

frbf Implementation of the "Flexible kernels for RBF network" algorithm

freqMAP Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate

frontier Stochastic Frontier Analysis

fso Fuzzy Set Ordination

ftnonpar Features and Strings for Nonparametric Regression

fts R interface to tslib (a time series library in c++)

ftsa Functional time series analysis

fun Use R for Fun

functional Curry, Compose, and other higher-order functions

futile Futile base package

futile.any Futile library to provide some polymorphism

futile.logger Futile logger subsystem

futile.matrix Futile matrix utilities

futile.options Futile options management

futile.paradigm A framework for working in a functional programming paradigm in R

fuzzyFDR Exact calculation of fuzzy decision rules for multiple testing

fuzzyOP Fuzzy numbers and the main mathematical operations

fuzzyRankTests Fuzzy Rank Tests and Confidence Intervals

fwdmsa Forward search for Mokken scale analysis

fxregime Exchange Rate Regime Analysis

GA4Stratification A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling

GAD GAD: Analysis of variance from general principles

GAMBoost Generalized linear and additive models by likelihood based boosting

GAMens Applies GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification

GANPA Gene Association Network-based Pathway Analysis

GANPAdata The GANPA Datasets Package

GB2 Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation

GDD GD device for creating bitmap graphics as jpeg, png or gif files using gd library

GEOmap Topographic and Geologic Mapping

GEVcdn GEV conditonal density estimation network

GExMap A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data

GGEBiplotGUI GGE Biplots in R

GGMselect Gaussian Graphs Models selection

GGally Extension to ggplot2

GLDEX Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods

GOFSN Goodness-of-fit tests for the family of skew-normal models

GOSim Computation of functional similarities between GO terms and gene products; GO enrichement analysis

GPArotation GPA Factor Rotation

GPseq gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments

GRRGI Gauge R and R Confidence Intervals

GSA Gene set analysis

GSM Gamma Shape Mixture

GUTS GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model

GWAF Genome-Wide Association analyses with Family data

GWASExactHW Exact Hardy-Weinburg testing for Genome Wide Association Studies

GWAtoolbox GWAS Quality Control

GWRM GWRM

GenABEL genome-wide SNP association analysis

GenKern Functions for generating and manipulating binned kernel density estimates

GenSA R functions for Generalized Simulated Annealing

GeneCycle Identification of Periodically Expressed Genes

GeneF Package for Generalized F-statistics

GeneNet Modeling and Inferring Gene Networks

GeneReg Construct time delay gene regulatory network

Geneclust Simulation and analysis of spatial structure of population genetics data

Geneland Detection of structure from multilocus genetic data

GeneralizedHyperbolic The generalized hyperbolic distribution

GeoXp Interactive exploratory spatial data analysis

GhcnDaily Downloads and processes GHCN daily

GillespieSSA Gillespie's Stochastic Simulation Algorithm (SSA)

GrapheR A multiplatform GUI for drawing customizable graphs in R

GrassmannOptim Grassmann Manifold Optimization

GridR Executes functions on remote hosts, clusters or grids

GriegSmith Uses Grieg-Smith method on 2 dimentional spatial data

GroupSeq Performing computations related to group sequential designs

Guerry Guerry: maps, data and methods related to Guerry (1833) "Moral Statistics of France"

g.data Delayed-Data Packages

gMCP Graph Based Multiple Comparison Procedures

gPdtest Bootstrap goodness-of-fit test for the generalized Pareto distribution

gRain Graphical Independence Networks

gRapHD Efficient selection of undirected graphical models for high-dimensional datasets

gRbase A package for graphical modelling in R

gRc Inference in Graphical Gaussian Models with Edge and Vertex Symmetries

gRim Graphical Interaction Models

gWidgets gWidgets API for building toolkit-independent, interactive GUIs

gWidgetsRGtk2 Toolkit implementation of gWidgets for RGtk2

gWidgetsWWW Toolkit implementation of the gWidgets API for use with web pages

gWidgetstcltk Toolkit implementation of gWidgets for tcltk package

gafit Genetic Algorithm for Curve Fitting

galts Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation

gam Generalized Additive Models

gamair Data for "GAMs: An Introduction with R"

gamboostLSS Boosting Methods for GAMLSS Models

games Statistical Estimation of Game-Theoretic Models

gamesNws Playing games using a NWS Server

gamlss Generalized Additive Models for Location Scale and Shape

gamlss.add GAMLSS Additive

gamlss.cens Fitting an interval response variable using gamlss.family distributions

gamlss.data GAMLSS Data

gamlss.demo Demos for GAMLSS

gamlss.dist Distributions to be used for GAMLSS modelling

gamlss.mx A GAMLSS add on package for fitting mixture distributions

gamlss.nl Fitting non linear parametric GAMLSS models

gamlss.tr Generating and fitting truncated (gamlss.family) distributions

gamlss.util GAMLSS Utilities

gamm4 Generalized additive mixed models using mgcv and lme4

gap Genetic analysis package

gaussDiff Difference measures for multivariate Gaussian probability density functions

gaussquad Collection of functions for Gaussian quadrature

gbRd Utilities for processing Rd objects and files

gbev Gradient Boosted Regression Trees with Errors-in-Variables

gbm Generalized Boosted Regression Models

gbs Package for Generalized Birnbaum-Saunders Distributions

gcExplorer Graphical Cluster Explorer

gcbd GPU/CPU Benchmarking in Debian-based systems

gclus Clustering Graphics

gcmr Gaussian Copula Marginal Regression

gcmrec General class of models for recurrent event data

gcolor Provides an Inequation Algorithm Function and a solution to import DIMACS files

gdata Various R programming tools for data manipulation

gdistance distances and routes on geographical grids

gdsfmt CoreArray Genomic Data Structure (GDS) R Interface

gee Generalized Estimation Equation solver

geepack Generalized Estimating Equation Package

geiger Analysis of evolutionary diversification

genalg R Based Genetic Algorithm

geneARMA Simulate, model, and display data from a time-course microarray experiment with periodic gene expression

geneListPie Profiling a gene list into GOslim or KEGG function pie

genepi Genetic Epidemiology Design and Inference

genetics Population Genetics

genoPlotR Plot publication-grade gene and genome maps

genomatic Manages microsatellite projects. Creates 96-well maps, genotyping submission forms, rerun management, and import into statistical software

genridge Generalized ridge trace plots for ridge regression

geoPlot Performs Address Comparison

geoR Analysis of geostatistical data

geoRglm geoRglm - a package for generalised linear spatial models

geofd Spatial prediction for function value data

geomapdata Data for topographic and Geologic Mapping

geometry Mesh generation and surface tesselation

geonames Interface to www.geonames.org web service

geophys Geophysics, Continuum Mechanics, Mogi Model

geosphere Spherical Trigonometry

geozoo Zoo of Geometric Objects

getopt C-like getopt behavior

ggcolpairs Combination of GGplot2 plots into a matrix based on data columns

ggdendro Tools for extracting dendrogram and tree diagram plot data for use with ggplot

ggm Graphical Gaussian Models

ggplot2 An implementation of the Grammar of Graphics

ghyp A package on the generalized hyperbolic distribution and its special cases

giRaph The giRaph package for graph representation in R

gibbs.met Naive Gibbs Sampling with Metropolis Steps

glasso Graphical lasso- estimation of Gaussian graphical models

gld Estimation and use of the generalised (Tukey) lambda distribution

gllm Generalised log-linear model

glm2 Fitting Generalized Linear Models

glmc Fitting Generalized Linear Models Subject to Constraints

glmdm R Code for Simulation of GLMDM

glmmAK Generalized Linear Mixed Models

glmmBUGS Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS

glmmML Generalized linear models with clustering

glmnet Lasso and elastic-net regularized generalized linear models

glmnetcr Fit a penalized constrained continuation ratio model for predicting an ordinal response

glmpath L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model

glmpathcr Fit a penalized continuation ratio model for predicting an ordinal response

glmperm Inference in Generalized Linear Models

glmulti GLM model selection and multimodel inference made easy

globalboosttest Testing the additional predictive value of high-dimensional data

glogis Fitting and Testing Generalized Logistic Distributions

glpk GNU Linear Programming Kit

glpkAPI R Interface to C API of GLPK

glrt Generalized Logrank Tests for Interval-censored Failure Time Data

gmaps Wrapper and auxilliary functions for maps package to work with grid graphics system

gmm Generalized Method of Moments and Generalized Empirical Likelihood

gmodels Various R programming tools for model fitting

gmp Multiple Precision Arithmetic

gmt Interface between GMT Map-Making Software and R

gmvalid Validation of graphical models

gnm Generalized Nonlinear Models

gnumeric Read data from files readable by gnumeric

goalprog Weighted and lexicographical goal programming and optimization

gof Model-diagnostics based on cumulative residuals

gogarch Generalized Orthogonal GARCH (GO-GARCH) models

gooJSON Google JSON Data Interpreter for R

googleVis Interface between R and the Google Visualisation API

googlebigquery R client library for communicating with the Google Bigquery service

gpairs gpairs: The Generalized Pairs Plot

gpclib General Polygon Clipping Library for R

gplots Various R programming tools for plotting data

gpls Classification using generalized partial least squares

gptk Gaussian Processes Tool-Kit

gputools A few GPU enabled functions

grImport Importing Vector Graphics

grade Provides functions for matching student-answers to teacher answers for a variety of data types

granova Graphical Analysis of Variance

granovaGG Graphical Analysis of Variance Using ggplot2

graphComp Visual graph comparison

graphicsQC Quality Control for Graphics in R

graphite GRAPH Interaction from pathway Topological Environment

gregmisc Greg's Miscellaneous Functions

gridBase Integration of base and grid graphics

gridExtra functions in Grid graphics

grofit The package was developed to fit fit many growth curves obtained under different conditions

grouped Regression Analysis of Grouped and Coarse Data

grplasso Fitting user specified models with Group Lasso penalty

grpreg Regularization paths for regression models with grouped covariates

grt General Recognition Theory

gsDesign Group Sequential Design

gsarima Two functions for Generalized SARIMA time series simulation

gsc Generalised Shape Constraints

gsl wrapper for the Gnu Scientific Library

gsmoothr Smoothing tools

gss General Smoothing Splines

gstat spatial and spatio-temporal geostatistical modelling, prediction and simulation

gstudio GeneticStudio packages for R

gsubfn Utilities for strings and function arguments

gtcorr Calculate efficiencies of group testing algorithms with correlated responses

gtools Various R programming tools

gumbel Gumbel copula

gvlma Global Validation of Linear Models Assumptions

gwerAM Controlling the genome-wide type I error rate in association mapping experiments

HAC Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)

HAPim HapIM

HDMD Statistical Analysis Tools for High Dimension Molecular Data (HDMD)

HDclassif High Dimensionnal Supervised Classification and Clustering

HFWutils csv import, csv export, garbage collection,string matching and passing by reference

HGLMMM Hierarchical Generalized Linear Models

HH Statistical Analysis and Data Display: Heiberger and Holland

HI Simulation from distributions supported by nested hyperplanes

HLMdiag Diagnostic tools for two-level normal hierarchical linear models

HMM HMM - Hidden Markov Models

HMR Flux estimation with static chamber data

HPbayes Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling

HSAUR A Handbook of Statistical Analyses Using R

HSAUR2 A Handbook of Statistical Analyses Using R (2nd Edition)

HSROC Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test

HTMLUtils Facilitates automated HTML report creation

HWEBayes Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing

HWEintrinsic Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem

HadoopStreaming Utilities for using R scripts in Hadoop streaming

HapEstXXR HapEstXXR

Haplin Analyzing case-parent triad and/or case-control data with SNP haplotypes

HaploSim HaploSim

HardyWeinberg Graphical tests for Hardy-Weinberg equilibrium

HiDimDA High Dimensional Discriminant Analysis

HiddenMarkov Hidden Markov Models

HistData Data sets from the history of statistics and data visualization

Hmisc Harrell Miscellaneous

Hotelling Hotelling's T-squared test and variants

HumMeth27QCReport HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays

HybridMC Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques

HydroMe Estimation of Soil Hydraulic Parameters from Experimental Data

HyperbolicDist The hyperbolic distribution

haarfisz Software to perform Haar Fisz transforms

hacks Convenient R Functions

halp Show certain type of comments from function bodies as "live-help"

hapassoc Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

haplo.ccs Estimate Haplotype Relative Risks in Case-Control Data

haplo.stats Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

hapsim Haplotype Data Simulation

hash Full feature implementation of hash/associated arrays/dictionaries

hbim Hill/Bliss Independence Model for Combination Vaccines

hbmem Hierarchical Bayesian Analysis of Recognition Memory

hda Heteroscedastic Discriminant Analysis

hddplot Use known groups in high-dimensional data to derive scores for plots

hdeco Hierarchical DECOmposition of Entropy for Categorical Map Comparisons

hdf5 HDF5

hdrcde Highest density regions and conditional density estimation

heatmap.plus Heatmap with more sensible behavior

heavy Package for outliers accomodation using heavy-tailed distributions

helloJavaWorld Hello Java World

helpr Help for R

heplots Visualizing Tests in Multivariate Linear Models

hergm Hierarchical Exponential-Family Random Graph Models

hett Heteroscedastic t-regression

hexView Viewing Binary Files

hexbin Hexagonal Binning Routines

hgam High-dimensional Additive Modelling

hglm Hierarchical Generalized Linear Models

hier.part Hierarchical Partitioning

highlight Syntax highlighter

hints Provide hints on what to do next

hisemi Hierarchical Semiparametric Regression of Test Statistics

histogram Construction of regular and irregular histograms with different options for automatic choice of bins

hive Hadoop InteractiVE

hlr Hidden Logistic Regression

hmm.discnp Hidden Markov models with discrete non-parametric observation distributions

holdem Texas Holdem simulator

homals Gifi Methods for Optimal Scaling

homeR Functions useful for building physics

homtest Homogeneity tests for Regional Frequency Analysis

hopach Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)

hot Computation on micro-arrays

hotspots Hot spots

howmany A lower bound for the number of correct rejections

hsmm Hidden Semi Markov Models

hts Hierarchical and grouped time series

httpRequest Basic HTTP Request

huge High-dimensional Undirected Graph Estimation

hwde Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci

hwriter HTML Writer - Outputs R objects in HTML format

hybridHclust Hybrid hierarchical clustering

hydroGOF Goodness-of-fit functions for comparison of simulated and observed hydrological time series

hydroTSM Time series management, analysis and interpolation for hydrological modelling

hyperSpec Interface for hyperspectral data sets, i.e. spectra + meta information (spatial, time, concentration, …)

hyperdirichlet A generalization of the Dirichlet distribution

hypergeo The hypergeometric function

hypred Simulation of genomic data in applied genetics

IBrokers R API to Interactive Brokers Trader Workstation

ICC Functions facilitating the estimation of the Intraclass Correlation Coefficient

ICE Iterated Conditional Expectation

ICEinfer Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples

ICS Tools for Exploring Multivariate Data via ICS/ICA

ICSNP Tools for Multivariate Nonparametrics

IDPmisc Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)

IFP Identifying functional polymorphisms in genetic association studies

IMIS Increamental Mixture Importance Sampling

IPSUR Introduction to Probability and Statistics Using R

IQCC Improved Quality Control Charts

IQMNMR Identification and Quantification of Metabolites by Using 1D 1H NMR FID

ISDA.R interval symbolic data analysis for R

ISOcodes Selected ISO codes

ISOweek Week of the year and weekday according to ISO 8601

ISwR Introductory Statistics with R

Icens NPMLE for Censored and Truncated Data

ImageMetrics Facilitates image analysis for social scientists

Imap Interactive Mapping

ImpactIV Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method

IndependenceTests Nonparametric tests of independence between random vectors

InfDim Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories

IniStatR Initiation à la Statistique avec R

Interpol Interpolation of amino acid sequences

Iso Functions to perform isotonic regression

IsoGene Testing for monotonic relationship between gene expression and doses in a microarray experiment

IsotopeR IsotopeR

iBUGS An Interface to R2WinBUGS by gWidgets

iCluster Integrative clustering of multiple genomic data types

iGenomicViewer Tool for sending interactive bioinformatic heatmaps with tool-tip content

iRefR iRefIndex Manager

iRegression iRegression

iSubpathwayMiner The package can implement the graph-based reconstruction, analyses, and visualization of the KEGG pathways

iWebPlots Interactive web-based plots

ibdreg Regression Methods for IBD Linkage With Covariates

ibr Iterative Bias Reduction

ic.infer Inequality constrained inference in linear normal situations

ic50 Standardized high-throughput evaluation of cell-based compound screens

icaOcularCorrection Independent Components Analysis (ICA) based eye-movement correction

icomp ICOMP criterion

identity Jacquard Condensed Coefficients of Identity

idr Irreproducible discovery rate

ieeeround Functions to set and get the IEEE rounding mode

ifa Independent Factor Analysis

ifs Iterated Function Systems

ifultools Insightful Research Tools

igraph Network analysis and visualization

igraphtosonia Convert iGraph graps to SoNIA .son files

iid.test iid-test

imguR Share plots using the imgur.com image hosting service

imprProbEst Minimum distance estimation in an imprecise probability model

imputation imputation

impute impute: Imputation for microarray data

imputeMDR The Multifactor Dimensionality Reduction (MDR) Analysis for Imcomplete Data

indicspecies Functions to assess the strength and significance of relationship of species site group associations

ineq Measuring Inequality, Concentration, and Poverty

inference Functions to extract inferential values of a fitted model object

influence.ME Tools for detecting influential data in mixed effects models

infoDecompuTE Information Decomposition of Two-phase Experiments

infochimps An R wrapper for the infochimps.com API services

informR informR: R Tools for Creating Sequence Statistics

infotheo Information-Theoretic Measures

inline Inline C, C++, Fortran function calls from R

inlinedocs Convert inline comments to documentation

insideRODE insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes

intamap procedures for automated interpolation

intamapInteractive procedures for automated interpolation - methods only to be used interactively, not included in intamap package

intcox Iterated Convex Minorant Algorithm for interval censored event data

integrOmics end of integrOmics package

integrativeME integrative mixture of experts

interactivity toggle R interactive mode

interval Weighted Logrank Tests and NPMLE for interval censored data

intervals Tools for working with points and intervals

introgress methods for analyzing introgression between divergent lineages

ipdmeta Tools for Individual patient data and Mixed-level Meta-analysis

iplots iPlots - interactive graphics for R

ipptoolbox IPP Toolbox

ipred Improved Predictors

ipw Estimate inverse probability weights

irlba Fast partial SVD by implicitly-restarted Lanczos bidiagonalization

irr Various Coefficients of Interrater Reliability and Agreement

irtProb Utilities and Probability Distributions Related to Multidimensional Person Item Response Models (IRT)

irtoys Simple interface to the estimation and plotting of IRT models

isa2 The Iterative Signature Algorithm

isdals Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences

ismev An Introduction to Statistical Modeling of Extreme Values

isocir Isotonic Inference for Circular data

isopam Isopam (Clustering)

isopat Calculation of isotopic pattern for a given molecular formula

isotone Active set and generalized PAVA for isotone optimization

isva Independent Surrogate Variable Analysis

iteRates Parametric rate comparison

iterLap Approximate probability densities by iterated Laplace Approximations

iterators Iterator construct for R

itertools Iterator Tools

its Irregular Time Series

itsmr Time series analysis package for students

iv Information Visualisation with UML and Graphs

ivivc A data analysis tool for in vitro-in vivo correlation (IVIVC)

JADE JADE and ICA performance criteria

JGR JGR - Java Gui for R

JJcorr Calculates polychorical correlations for several copula families

JM Joint Modelling of Longitudinal and Survival Data

JOP Joint Optimization Plot

JavaGD Java Graphics Device

Johnson Johnson Transformation

JointModeling Joint Modelling of Mean and Dispersion

JudgeIt JudgeIt

Julia Fractal Image Data Generator

jit Just-in-time compiler for the R language

jointDiag Joint Approximate Diagonalization of a set of square matrices

jpeg Read and write JPEG images

KFAS Kalman filter and smoothers for exponential family state space models

KMsurv Data sets from Klein and Moeschberger (1997), Survival Analysis

Kendall Kendall rank correlation and Mann-Kendall trend test

KernSmooth Functions for kernel smoothing for Wand & Jones (1995)

KernSmoothIRT Nonparametric Item Reponse Theory

KrigInv Kriging-based Inversion for Deterministic and Noisy Computer Experiments

KsPlot Check the power of a statistical model

kappalab Non-additive measure and integral manipulation functions

kerdiest Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions

kerfdr semi-parametric kernel-based approach to local fdr estimations

kernelPop Spatially explicit population genetic simulations

kernlab Kernel-based Machine Learning Lab

kin.cohort Analysis of kin-cohort studies

kinfit Routines for fitting kinetic models to chemical degradation data

kinship mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees

kinship2 Pedigree functions

kknn Weighted k-Nearest Neighbors

klaR Classification and visualization

klausuR Multiple Choice Test Evaluation

klin Linear equations with Kronecker structure

km.ci Confidence intervals for the Kaplan-Meier estimator

kmi Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting

kml K-Means for Longitudinal Data (KmL)

kml3d K-means for joint Longitudinal data

knn knn-gcv

knncat Nearest-neighbor classification with categorical variables

knnflex A more flexible KNN

knorm Microarray Data From Multiple Biologically Interrelated Experiments

kohonen Supervised and unsupervised self-organising maps

ks Kernel smoothing

kst Knowledge Space Theory

kulife Data sets and functions from the Faculty of Life Sciences, University of Copenhagen

kza Kolmogorov-Zurbenko Adaptive Filters

kzft Kolmogorov-Zurbenko Fourier Transform and Applications

kzs Kolmogorov-Zurbenko Spatial Smoothing and Applications

LCAextend Latent Class Analysis (LCA) with familial dependence in extended pedigrees

LDdiag Link Function and Distribution Diagnostic Test for Social Science Researchers

LDheatmap Graphical display of pairwise linkage disequilibria between SNPs

LDtests Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium

LGS simulating Linkage Group Selection (LGS)

LIM Linear Inverse Model examples and solution methods

LIStest Longest Increasing Subsequence Independence Test

LLAhclust Hierarchical clustering of variables or objects based on the likelihood linkage analysis method

LLdecomp Decomposes a set of variables into cliques and separators

LMERConvenienceFunctions A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions

LN3GV LN3GV

LPCM Local principal curve methods

LS2W Locally stationary two-dimensional wavelet process estimation scheme

LSD Lots of Superior Depictions

LTPDvar LTPD plans for sampling inspection by variables

LVQTools Learning Vector Quantization Tools

LambertW Gaussianize and analyze skewed, heavy-tailed data

LaplacesDemon Software for Bayesian Inference

LargeRegression Large Regressions

LeLogicielR Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)

LearnBayes Functions for Learning Bayesian Inference

LearnEDA Functions for Learning Exploratory Data Analysis

LiblineaR Linear Predictive Models Based On The Liblinear C/C++ Library

LifeTables A package to implement HMD model life table system

Lmoments L-moments and quantile mixtures

LogConcDEAD Log-concave Density Estimation in Arbitrary Dimensions

LogicForest Logic Forest

LogicReg Logic Regression

LogitNet Infer network based on binary arrays using regularized logistic regression

LoopAnalyst A collection of tools to conduct Levins' Loop Analysis

LowRankQP Low Rank Quadratic Programming

labdsv Ordination and Multivariate Analysis for Ecology

labeling Axis Labeling

labeltodendro Convert labels or tables to a dendrogram

labstatR Libreria del Laboratorio di Statistica con R

laeken Estimation of indicators on social exclusion and poverty

laercio Duncan test, Tukey test and Scott-Knott test

lago An efficient kernel algorithm for rare target detection and unbalanced classification

lancet.iraqmortality Surveys of Iraq Mortality Published in The Lancet

landsat Radiometric and topographic correction of satellite imagery

languageR Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"

lars Least Angle Regression, Lasso and Forward Stagewise

laser Likelihood Analysis of Speciation/Extinction Rates from Phylogenies

lasso2 L1 constrained estimation aka ‘lasso’

lassoshooting L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting

last.call Utility for returning previous commands as unevaluated calls and the full context of function calls

latdiag Draws diagrams useful for checking latent scales

latentnet Latent position and cluster models for statistical networks

lattice Lattice Graphics

latticeDensity Density estimation and nonparametric regression on irregular regions

latticeExtra Extra Graphical Utilities Based on Lattice

latticedl Lattice direct labels

latticist A graphical user interface for exploratory visualisation

lavaan Latent Variable Analysis

lawstat An R package for biostatistics, public policy, and law

lazy Lazy Learning for Local Regression

lcd Learn Chain graphs via Decomposition

lcda Latent Class Discriminant Analysis

lcmm Estimation of various latent class mixed models and joint latent class mixed models

lcmr lcmr package

ldDesign Design of experiments for detection of linkage disequilibrium

lda Collapsed Gibbs sampling methods for topic models

lda.cv Cross-validation for linear discriminate analysis

ldbounds Lan-DeMets Method for Group Sequential Boundaries

ldlasso LD LASSO Regression for SNP Association Study

leaps regression subset selection

leiv Bivariate linear errors-in-variables estimation

lemma Laplace approximated EM Microarray Analysis

lessR Less Code, More Results

lfe Linear Group Fixed Effects

lga Tools for linear grouping analysis (LGA)

lgtdl A set of methods for longitudinal data objects

lhs Latin Hypercube Samples

libamtrack libamtrack package

lifecontingencies Package to perform actuarial evaluation of life contingencies

limSolve Solving Linear Inverse Models

limitplot Jitter/CI Plot with Ordered Points Below the Limit of Detection

linkcomm Tools for Generating, Visualizing, and Analysing Link Communities in Networks

linprog Linear Programming / Optimization

list Statistical Methods for the Item Count Technique and List Experiment

ljr Logistic Joinpoint Regression

lmPerm Permutation tests for linear models

lmSupport Support for Linear Models

lme4 Linear mixed-effects models using S4 classes

lmeSplines lmeSplines

lmec Linear Mixed-Effects Models with Censored Responses

lmm Linear mixed models

lmmfit Goodness-of-fit-measures for linear mixed models with one-level-grouping

lmmlasso Linear mixed-effects models with Lasso

lmodel2 Model II Regression

lmom L-moments

lmomRFA Regional frequency analysis using L-moments

lmomco L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions

lmtest Testing Linear Regression Models

localdepth Local Depth

locfdr Computes local false discovery rates

locfit Local Regression, Likelihood and Density Estimation

locpol Kernel local polynomial regression

lodplot Plot a genome scan

log10 Decimal log plotting in two and three dimensions

log4r A simple logging system for R, based on log4j

logcondens Estimate a Log-Concave Probability Density from iid Observations

logcondiscr Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations

logging a tentative logging package

logistf Firth's bias reduced logistic regression

loglognorm Double log normal distribution functions

logregperm Inference in Logistic Regression

logspline Logspline density estimation routines

lokern Kernel Regression Smoothing with Local or Global Plug-in Bandwidth

longRPart Recursive partitioning of longitudinal data using mixed-effects models

longitudinal Analysis of Multiple Time Course Data

longitudinalData Longitudinal Data

longmemo Statistics for Long-Memory Processes (Jan Beran) – Data and Functions

longpower Sample size calculations for longitudinal data

lordif Logistic Regression Differential Item Functioning using IRT

lossDev Robust Loss Development Using MCMC

lpSolve Interface to Lp_solve v. 5.5 to solve linear/integer programs

lpSolveAPI R Interface for lp_solve version 5.5.2.0

lpc Lassoed principal components for testing significance of features

lpridge Local Polynomial (Ridge) Regression

lqa Penalized Likelihood Inference for GLMs

lsa Latent Semantic Analysis

lspls LS-PLS Models

lss the accelerated failure time model to right censored data based on least-squares principle

ltm Latent Trait Models under IRT

ltsa Linear time series analysis

lubridate Make dealing with dates a little easier

luca Likelihood inference from case-control data Under Covariate Assumptions (LUCA)

M3 Reading M3 files

MADAM This package provides some basic methods for meta-analysis

MAINT.Data Model and Analize Interval Data

MALDIquant Quantitative analysis of MALDI-TOF MS data

MAMA Meta-Analysis of MicroArry

MAMSE Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights

MAPLES Smoothed age profile estimation

MARSS Multivariate Autoregressive State-Space Modeling

MASS Support Functions and Datasets for Venables and Ripley's MASS

MAT Multidimensional Adaptive Testing (MAT)

MAc Meta-Analysis with Correlations

MAclinical Class prediction based on microarray data and clinical parameters

MAd Meta-Analysis with Mean Differences

MBA Multilevel B-spline Approximation

MBESS MBESS

MCAPS MCAPS data and results

MCE Tools for evaluating Monte Carlo Error

MCLIME Simultaneous Estimation of the Regression Coefficients and Precision Matrix

MCMCglmm MCMC Generalised Linear Mixed Models

MCMChybridGP Hybrid Markov chain Monte Carlo using Gaussian Processes

MCMCpack Markov chain Monte Carlo (MCMC) Package

MCPAN Multiple comparisons using normal approximation

MCPMod Design and Analysis of Dose-Finding Studies (see also DoseFinding package)

MCUSUM Multivariate Cumulative Sum (MCUSUM) Control Chart

MChtest Monte Carlo hypothesis tests with Sequential Stopping

MDR Detect gene-gene interactions using multifactor dimensionality reduction

MEMSS Data sets from Mixed-effects Models in S

MEWMA Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart

MFDA Model Based Functional Data Analysis

MFDF Modeling Functional Data in Finance

MFSAS Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans

MHadaptive General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling

MISA Bayesian Model Search and Multilevel Inference for SNP Association Studies

MIfuns Pharmacometric tools for data preparation, modeling, simulation, and reporting

MImix Mixture summary method for multiple imputation

MKLE Maximum kernel likelihood estimation

MKmisc Miscellaneous Functions from M. Kohl

MLCM Maximum Likelihood Conjoint Measurement

MLDA Methylation Linear Discriminant Analysis (MLDA)

MLDS Maximum Likelihood Difference Scaling

MLEcens Computation of the MLE for bivariate (interval) censored data

MLPAstats MLPA analysis to detect gains and loses in genes

MMG Mixture Model on Graphs

MMIX Model selection uncertainty and model mixing

MMST DATASETS FROM MMST

MNM Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks

MNP R Package for Fitting the Multinomial Probit Model

MOCCA Multi-objective optimization for collecting cluster alternatives

MPV Data Sets from Montgomery, Peck and Vining's Book

MSBVAR Markov-Switching, Bayesian, Vector Autoregression Models

MSG Data and functions for the book Modern Statistical Graphics

MSToolkit The MSToolkit library for clinical trial design

MTSKNN Multivariate two-sample tests based on K-nearest-neighbors

MUCflights Munich Franz-Josef-Strauss Airport Pattern Analysis

MVA An Introduction to Applied Multivariate Analysis with R

MVR Mean-Variance Regularization

MVpower Give power for a given effect size using multivariate classification methods

MaXact Exact max-type Cochran-Armitage trend test(CATT)

MarkedPointProcess Analysis of Marks of Marked Point Processes

MasterBayes ML and MCMC Methods for Pedigree Reconstruction and Analysis

MatchIt MatchIt

Matching Multivariate and Propensity Score Matching with Balance Optimization

Matrix Sparse and Dense Matrix Classes and Methods

MatrixEQTL Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

MatrixModels Modelling with Sparse And Dense Matrices

McParre Run a Regenerative Markov chain in Parallel on a Cluster

Mcomp Data from the M-competitions

MeDiChI MeDiChI ChIP-chip deconvolution library

MergeGUI A GUI for Merging Datasets in R

MetABEL meta-analysis of genome-wide SNP association results

MetaPCA MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data

MetaQC MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis

MetabolAnalyze Probabilistic latent variable models for metabolomic data

Metabonomic GUI for Metabonomic Analysis

Meth27QC Meth27QC: sample quality analysis, and sample control analysis

MethComp Functions for analysis of method comparison studies

Miney Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)

MiscPsycho Miscellaneous Psychometric Analyses

MissingDataGUI A GUI for Missing Data Exploration

MixSim Simulating Data to Study Performance of Clustering Algorithms

Modalclust Hierarchical Modal Clustering

ModelGood Validation of prediction models

ModelMap Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps

MortalitySmooth Smoothing Poisson counts with P-splines

MplusAutomation Automating Mplus Model Estimation and Interpretation

MsatAllele Visualizes the scoring and binning of microsatellite fragment sizes

MuMIn Multi-model inference

MultEq Multiple equivalence tests and simultaneous confidence intervals

MultiPhen MultiPhen, a package for the genetic association testing of multiple phenotypes

Multiclasstesting Performance of N-ary classification testing

mAr Multivariate AutoRegressive analysis

mFilter Miscellaneous time series filters

mRm mRm: An R package for conditional maximum likelihood estimation in mixed Rasch models

maRketSim Market simulator for R

maanova Tools for analyzing Micro Array experiments

magic create and investigate magic squares

magma Matrix Algebra on GPU and Multicore Architectures

magnets Simulate micro-magnets dynamics

makesweave Literate Programming with Make and Sweave

mapLD Linkage Disequilibrium Mapping

mapReduce mapReduce - flexible mapReduce algorithm for parallel computation

mapdata Extra Map Databases

mapproj Map Projections

maps Draw Geographical Maps

maptools Tools for reading and handling spatial objects

maptree Mapping, pruning, and graphing tree models

mar1s Multiplicative AR(1) with Seasonal Processes

marelac Tools for Aquatic Sciences

marelacTeaching Datasets and tutorials for use in aquatic sciences

margLikArrogance Marginal Likelihood Computation via Arrogance Sampling

marginTree marginTree: margin trees for high-dimensional classification

marginalmodelplots Marginal Mean Model Plots

mathgraph Directed and undirected graphs

maticce Mapping Transitions in Continuous Character Evolution

matlab MATLAB emulation package

matrixStats Methods that apply to rows and columns of a matrix

matrixcalc Collection of functions for matrix differential calculus

maxLik Maximum Likelihood Estimation

maxLinear Conditional Samplings for Max-Linear Models

maxent Text Classification Using Low-memory Multinomial Logistic Regression

maxstat Maximally Selected Rank Statistics

mblm Median-Based Linear Models

mbmdr Model Based Multifactor Dimensionality Reduction

mboost Model-Based Boosting

mc2d Tools for Two-Dimensional Monte-Carlo Simulations

mcclust Process an MCMC Sample of Clusterings

mcga Machine coded genetic algorihms for real-valued optimization problems

mcgibbsit Warnes and Raftery's MCGibbsit MCMC diagnostic

mclogit Mixed Conditional Logit

mclust Model-Based Clustering / Normal Mixture Modeling

mcmc Markov Chain Monte Carlo

mcmcplots Create Plots from MCMC Output

mco Multi criteria optimization algorithms and related functions

mcprofile Multiple Contrast Profiles

mcsm Functions for Monte Carlo Methods with R

mda Mixture and flexible discriminant analysis

meboot Maximum Entropy Bootstrap for Time Series

mecdf Multivariate Empirical Cumulative Distribution Functions

medAdherence Medication Adherence: Commonly Used Definitions

mederrRank Bayesian Methods for Identifying the Most Harmful Medication Errors

mediation R Package for Causal Mediation Analysis

mefa Multivariate Data Handling in Ecology and Biogeography

mefa4 Multivariate Data Handling with S4 Classes and Sparse Matrices

meifly Interactive model exploration using GGobi

mem Moving Epidemics Method R Package

memisc Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation

memoise Memoise functions

merror Accuracy and Precision of Measurements

meta Meta-Analysis with R

metaLik Likelihood inference in meta-analysis and meta-regression models

metaMA Meta-analysis for MicroArrays

metacor Meta-analysis of correlation coefficients

metafor Meta-Analysis Package for R

metatest Fit and test metaregression models

mfp Multivariable Fractional Polynomials

mfr Minimal Free Resolutions of Graph Edge Ideals

mgcv GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL

mgpd Functions for multivariate generalized Pareto distribution (MGPD of Type II)

mhsmm Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences

mht Multiple Hypotheses Testing For Variable Selection

mhurdle Estimation of models with limited dependent variables

mi Missing Data Imputation and Model Checking

miP Multiple Imputation Plots

miRtest combined miRNA- and mRNA-testing

micEcon Microeconomic Analysis and Modelling

micEconAids Demand Analysis with the Almost Ideal Demand System (AIDS)

micEconCES Analysis with the Constant Elasticity of Scale (CES) function

micEconSNQP Symmetric Normalized Quadratic Profit Function

mice Multivariate Imputation by Chained Equations

microbenchmark Sub microsecond accurate timing functions

migui Graphical User Interface of the mi Package

mimR A package for graphical modelling in R

minPtest Gene region-level testing procedure for SNP data, using the min P test resampling approach

miniGUI tktcl quick and simple function GUI

minimax Minimax distribution family

minpack.lm R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK

minqa Derivative-free optimization algorithms by quadratic approximation

minxent Entropy Optimization Distributions

mirf MULTIPLE IMPUTATION AND RANDOM FORESTS FOR UNOBSERVABLE PHASE, HIGH-DIMENSIONAL DATA

mirt Multidimensional Item Response Theory

misc3d Miscellaneous 3D Plots

miscTools Miscellanneous Tools and Utilities

missForest Nonparametric Missing Value Imputation using Random Forest

missMDA Handling missing values with/in multivariate data analysis (principal component methods)

mitools Tools for multiple imputation of missing data

mix Estimation/multiple Imputation for Mixed Categorical and Continuous Data

mixAK Mixture of methods including mixtures

mixOmics Omics Data Integration Project

mixPHM Mixtures of proportional hazard models

mixRasch Mixture Rasch Models with JMLE

mixdist Finite Mixture Distribution Models

mixedQF Estimator with Qudratics Forms in Mixeds Models

mixer Random graph clustering

mixexp Design and analysis of mixture experiments

mixfdr Computes false discovery rates and effect sizes using normal mixtures

mixlow Mixlow Method for Assessing Drug Synergism/Antagonism

mixreg Functions to fit mixtures of regressions

mixsep Forensic Genetics DNA Mixture Separation

mixsmsn Fitting finite mixture of scale mixture of skew-normal distributions

mixstock functions for mixed stock analysis

mixtools Tools for analyzing finite mixture models

mkin Routines for fitting kinetic models with one or more state variables to chemical degradation data

mkssd Efficient multi-level k-circulant supersaturated designs

mlbench Machine Learning Benchmark Problems

mlegp Maximum Likelihood Estimates of Gaussian Processes

mleur Maximum likelihood unit root test

mlmRev Examples from Multilevel Modelling Software Review

mlmmm ML estimation under multivariate linear mixed models with missing values

mlogit multinomial logit model

mlogitBMA Bayesian Model Averaging for Multinomial Logit Models

mmap Map Pages of Memory

mmcm Modified Maximum Contrast Method

mnormt The multivariate normal and t distributions

mnspc Multivariate Nonparametric Statistical Process Control

moc GENERAL NONLINEAR MIXTURES OF CURVES

modTempEff Modelling temperature effects using time series data

modeest Mode Estimation

modehunt Multiscale Analysis for Density Functions

modelcf Modeling physical computer codes with functional outputs using clustering and dimensionality reduction

modelfree Model-free estimation of a psychometric function

modeltools Tools and Classes for Statistical Models

moduleColor Basic module functions

mokken Mokken Scale Analysis in R

mombf Moment and Inverse Moment Bayes factors

moments Moments, cumulants, skewness, kurtosis and related tests

mondate Keep track of dates in terms of months

monmlp Monotone multi-layer perceptron neural network

monoProc strictly monotone smoothing procedure

monomvn Estimation for multivariate normal and Student-t data with monotone missingness

monreg Nonparametric monotone regression

moonsun Basic astronomical calculations with R

mosaic Project MOSAIC (mosaic-web.org) math and stats teaching utilities

motmot Models of Trait Macroevolution on Trees

moult Models for Analysing Moult Data

movMF Mixtures of von Mises Fisher Distributions

mpa CoWords Method

mpc MPC - Multiple Precision Complex Library

mpm Multivariate Projection Methods

mpmcorrelogram Multivariate Partial Mantel Correlogram

mprobit Multivariate probit model for binary/ordinal response

mpt Multinomial Processing Tree (MPT) Models

mra Analysis of Mark-Recapture data

mratios Inferences for ratios of coefficients in the general linear model

mrdrc Model-robust concentration-response analysis

mritc MRI tissue classification

mrt Wright & London's Modern Regression Techniques

msBreast Protein Mass Spectra Dataset from a Breast Cancer Study

msDilution Protein Mass Spectra Dataset from a Dilution Experiment

msProcess Protein Mass Spectra Processing

msProstate Protein Mass Spectra Dataset from a Prostate Cancer Study

msSurv Nonparametric Estimation for Multistate Models

mseq Modeling non-uniformity in short-read rates in RNA-Seq data

msir Model-based Sliced Inverse Regression

msm Multi-state Markov and hidden Markov models in continuous time

mspath Multi-state Path-Dependent Models in Discrete Time

msr Morse-Smale approximation, regression and visualization

mstate Data preparation, estimation and prediction in multi-state models

mtcreator Creating MAGE-TAB files using mtcreator

mtsc Multivariate Timeseries Clusters

mtsdi Multivariate time series data imputation

muRL Mailmerge using R, LaTeX, and the Web

muS2RC Splus to R Compatibility for package muStat

muStat Prentice Rank Sum Test and McNemar Test

muUtil muStat Utility Functions

mugnet Mixture of Gaussian Bayesian Network Model

muhaz Hazard Function Estimation in Survival Analysis

multcomp Simultaneous Inference in General Parametric Models

multcompView Visualizations of Paired Comparisons

multiPIM Variable Importance Analysis with Population Intervention Models

multibiplotGUI Multibiplot Analysis in R

multic Quantitative linkage analysis tools using the variance components approach

multicore Parallel processing of R code on machines with multiple cores or CPUs

multilevel Multilevel Functions

multinomRob Robust Estimation of Overdispersed Multinomial Regression Models

multipol multivariate polynomials

multisensi Multivariate Sensitivity Analysis

multitaper Multitaper Spectral Analysis

multmod Testing of multiple outcomes

multxpert Common Multiple Testing Procedures and Gatekeeping Procedures

munfold Metric Unfolding

munsell Munsell colour system

mutatr Mutable objects for R

mutoss Unified multiple testing procedures

mutossGUI A graphical user interface for the MuToss Project

mvShapiroTest Generalized Shapiro-Wilk test for multivariate normality

mvabund statistical methods for analysing multivariate abundance data

mvbutils Workspace organization, code and documentation editing, package prep and editing, etc

mvgraph Multivariate, Interactive Visualization

mvmeta Multivariate meta-analysis and meta-regression

mvna Nelson-Aalen estimator of the cumulative hazard in multistate models

mvngGrAd Software for moving grid adjustment in plant breeding field trials

mvnmle ML estimation for multivariate normal data with missing values

mvnormtest Normality test for multivariate variables

mvoutlier Multivariate outlier detection based on robust methods

mvpart Multivariate partitioning

mvsf Shapiro-Francia Multivariate Normality Test

mvtBinaryEP Generates Correlated Binary Data

mvtnorm Multivariate Normal and t Distributions

mvtnormpcs Multivariate Normal and T Distribution functions of (Dunnett, 1989)

mvtsplot Multivariate Time Series Plot

mxkssd Efficient mixed-level k-circulant supersaturated designs

NADA Nondetects And Data Analysis for environmental data

NBPSeq The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq

NCBI2R NCBI2R-An R package to navigate and annotate genes and SNPs

NISTnls Nonlinear least squares examples from NIST

NMF Algorithms and framework for Nonnegative Matrix Factorization (NMF)

NMFN Non-negative Matrix Factorization

NMMAPSlite NMMAPS Data Lite

NMRS NMR Spectroscopy

NORMT3 Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t

NRAIA Data sets from "Nonlinear Regression Analysis and Its Applications"

NeMo Exceptionnal Network Motifs in biological networks

NeatMap Non-clustered heatmap alternatives

NestedCohort Survival Analysis for Cohorts with Missing Covariate Information

NetCluster Clustering for networks

NetData Network Data for McFarland's SNA R labs

NetIndices Estimating network indices, including trophic structure of foodwebs in R

NetworkAnalysis Statistical inference on populations of weighted or unweighted networks

NightDay Night and Day Boundary Plot Funtion

Nippon Japanese utility functions and data

nFDR Nonparametric Estimate of FDR Based on Bernstein Polynomials

nFactors Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test

nacopula Nested Archimedean Copulas

nanop tools for nanoparticle simulation and PDF calculation

nbpMatching functions for non-bipartite optimal matching

ncdf Interface to Unidata netCDF data files

ncdf4 Interface to Unidata netCDF (version 4 or earlier) format data files

ncf spatial nonparametric covariance functions

ncomplete ncomplete

ncvreg Regularization paths for SCAD- and MCP-penalized regression models

ndl Naive Discriminative Learning

ndvits NDVI Time series extraction and analysis

neariso Near-Isotonic Regression

negenes Estimating the number of essential genes in a genome

neldermead R port of the Scilab neldermead module

network Classes for Relational Data

networksis Simulate bipartite graphs with fixed marginals through sequential importance sampling

neuRosim Functions to generate fMRI data including activated data, noise data and resting state data

neuralnet Training of neural networks

nga NGA Earthquake Ground Motion Prediction Equations

nice Get or Set UNIX Niceness

nlADG Regression in the Normal Linear ADG Model

nleqslv Solve systems of non linear equations

nlme Linear and Nonlinear Mixed Effects Models

nlmeODE Non-linear mixed-effects modelling in nlme using differential equations

nloptr R interface to NLopt

nlreg Higher Order Inference for Nonlinear Heteroscedastic Models

nlrwr Nonlinear regression with R

nls2 Non-linear regression with brute force

nlstools Tools for nonlinear regression diagnostics

nlt A nondecimated lifting transform for signal denoising

nltm Non-linear Transformation Models

nlts (non)linear time series analysis

nnDiag k-Nearest Neighbor Diagnostic Tools

nnc Nearest Neighbor Autocovariates

nncRda Improved RDA Using nnc

nnclust Nearest-neighbour tools for clustering

nnet Feed-forward Neural Networks and Multinomial Log-Linear Models

nnls The Lawson-Hanson algorithm for non-negative least squares (NNLS)

nodeHarvest Node Harvest for regression and classification

noia Implementation of the Natural and Orthogonal InterAction (NOIA) model

nonbinROC ROC-type analysis for non-binary gold standards

nonparaeff Nonparametric Methods for Measuring Efficiency and Productivity

nonrandom Stratification and matching by the propensity score

nor1mix Normal (1-d) Mixture Models (S3 Classes and Methods)

norm Analysis of multivariate normal datasets with missing values

normalp Package for exponential power distributions (EPD)

normwhn.test Normality and White Noise Testing

nortest Tests for Normality

noverlap ncomplete

np Nonparametric kernel smoothing methods for mixed data types

npRmpi Parallel nonparametric kernel smoothing methods for mixed data types

nparLD Nonparametric Analysis of Longitudinal Data in Factorial Experiments

nparcomp nparcomp-package

npde Normalised prediction distribution errors for nonlinear mixed-effect models

nplplot Plotting non-parametric linkage results

npmc Nonparametric Multiple Comparisons

npmlreg Nonparametric maximum likelihood estimation for random effect models

nppbib Nonparametric Partially-Balanced Incomplete Block Design Analysis

npst Generalization of Hewitt's Seasonality Test

nsRFA Non-supervised Regional Frequency Analysis

nullabor Tools for graphical inference

numConversion Test of accuracy of as.character() for a numeric input using the standard arithmetic

numDeriv Accurate Numerical Derivatives

nutshell Data for "R in a Nutshell"

nutshellDE Beispieldaten zu "R in a Nutshell" [deutsche Ausgabe]

nvis Combination of visualization functions for nuclear data using ggplot2 and ggcolpairs

nws R functions for NetWorkSpaces and Sleigh

OAIHarvester Harvest Metadata Using OAI-PMH v2.0

ODB Open Document Databases (.odb) management

OPE Outer-product emulator

ORDER2PARENT Estimate parent distributions with data of several order statistics

ORIClust Order-restricted Information Criterion-based Clustering Algorithm

ORMDR ORMDR

OSACC Ordered Subset Analysis for Case-Control Studies

Oarray Arrays with arbitrary offsets

OjaNP Multivariate Methods Based on the Oja Median and Related Concepts

OligoSpecificitySystem Oligo Specificity System

Oncotree Estimating oncogenetic trees

OpenCL Interface allowing R to use OpenCL

OpenRepGrid Tools to analyse repertory grid data

OrdFacReg Least squares, logistic, and Cox-regression with ordered predictors

OrdMonReg Compute least squares estimates of one bounded or two ordered isotonic regression curves

OrgMassSpecR Organic Mass Spectrometry

objectProperties A factory of self-describing properties

objectSignals objectSignals

oblique.tree Oblique Trees for Classification Data

obsSens Sensitivity analysis for Observational studies

oc OC Roll Call Analysis Software

oce Analysis of Oceanographic data

ocomposition Gibbs sampler for ordered compositional data

odesolve Solvers for Ordinary Differential Equations

odfWeave Sweave processing of Open Document Format (ODF) files

odfWeave.survey Support for odfWeave on the survey package

odprism Optimal design and performance of random intercept and slope models

ofp Object-Functional Programming

omd filter the molecular descriptors for QSAR

oncomodel Maximum likelihood tree models for oncogenesis

onemap Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses

onion octonions and quaternions

opefimor Option Pricing and Estimation of Financial Models in R

openNLP openNLP Interface

openNLPmodels.en openNLP Models for English

openNLPmodels.es openNLP Models for Spanish

openair Tools for the analysis of air pollution data

opencpu.encode opencpu object encoder/decoder

openintro OpenIntro data sets and supplement functions

operator.tools Utilities for working with R's operators

operators Additional binary operators for the R language

oposSOM Package for analysis and visualization of metagenes

optBiomarker Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules

optimbase R port of the Scilab optimbase module

optimsimplex R port of the Scilab optimsimplex module

optimx A Replacement and Extension of the optim() Function

optmatch Functions for optimal matching

optparse Command line option parser

optpart Optimal partitioning of similarity relations

orQA Order Restricted Assessment Of Microarray Titration Experiments

orclus ORCLUS subspace clustering

ordPens Selection and/or Smoothing of Ordinal Predictors

orddom Ordinal Dominance Statistics

ordinal Regression Models for Ordinal Data

orientlib Support for orientation data

orloca The package deals with Operations Research LOCational Analysis models

orloca.es Spanish version of orloca package

oro.dicom Rigorous - DICOM Input / Output

oro.nifti Rigorous - NIfTI+ANALYZE+AFNI Input / Output

orsk Convertinging Odds Ratio to Relative Risk with Partial Data Information

orth Multivariate Logistic Regressions Using Orthogonalized Residuals

orthogonalsplinebasis Orthogonal Bspline Basis Functions

orthopolynom Collection of functions for orthogonal and orthonormal polynomials

osDesign Design and analysis of observational studies

osmar Importing and working with OpenStreetMap-Data

ouch Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

outliers Tests for outliers

oz Plot the Australian coastline and states

PASWR PROBABILITY and STATISTICS WITH R

PBImisc A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych”

PBSadmb PBS ADMB

PBSddesolve Solver for Delay Differential Equations

PBSmapping Mapping Fisheries Data and Spatial Analysis Tools

PBSmodelling GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations

PCIT PCIT algorithm - Partial Correlation Coefficient with Information Theory

PCS Calculate the probability of correct selection (PCS)

PERregress Regression Functions and Datasets

PET Simulation and Reconstruction of PET Images

PHYLOGR Functions for phylogenetically based statistical analyses

PK Basic Non-Compartmental Pharmacokinetics

PKfit A Data Analysis Tool for Pharmacokinetics

PKgraph Model diagnostics for population pharmacokinetic models

PKmodelFinder Software for Pharmacokinetic model

PKreport A reporting pipeline for checking population pharmacokinetic model assumption

PKtools unified computational interfaces for pop PK

PL.popN Population Size Estimation

PLIS Multiplicity control using Pooled LIS statisitcs

PMA Penalized Multivariate Analysis

POT Generalized Pareto Distribution and Peaks Over Threshold

PSAgraphics Propensity Score Analysis Graphics

PSCBS Analysis of Parent-Specific DNA Copy Numbers

PSCN Parent Specific DNA Copy Number Estimation

PSM Non-Linear Mixed-Effects modelling using Stochastic Differential Equations

PTAk Principal Tensor Analysis on k modes

PairViz Visualization using Eulerian tours and Hamiltonian decompositions

Peak2Trough Estimation of the peak-to-trough ratio of a seasonal variation component

Peaks Peaks

PearsonDS Pearson Distribution System

PearsonICA Independent component analysis using score functions from the Pearson system

PerformanceAnalytics Econometric tools for performance and risk analysis

PermAlgo Permutational algorithm to simulate survival data

PhViD PhViD: a R package for PharmacoVigilance signal Detection

PhysicalActivity Process Physical Activity Accelerometer Data

PoMoS Polynomial (ordinary differential equation) Model Search

PoiClaClu Classification and clustering of sequencing data based on a Poisson model

PoissonSeq Significance analysis of sequencing data based on a Poisson log linear model

PolynomF Polynomials in R

Pomic Pattern Oriented Modelling Information Criterion

PopGenKit Useful functions for (batch) file conversion and data resampling in microsatellite datasets

PottsUtils Utility Functions of the Potts Models

PowerTOST Power and Sample size based on two one-sided t-tests (TOST) for bioequivalence studies

PredictABEL Assessment of risk prediction models

PredictiveRegression Prediction Intervals for Three Basic Statistical Models

PresenceAbsence Presence-Absence Model Evaluation

ProDenICA Product Density Estimation for ICA using tilted Gaussian density estimates

ProbForecastGOP Probabilistic weather forecast using the GOP method

ProfessR Grades Setting and Exam Maker

ProfileLikelihood Profile Likelihood for a Parameter in Commonly Used Statistical Models

ProjectTemplate Automates the creation of new statistical analysis projects

PropCIs Computes confidence intervals for single proportions, for differences in proportions, for an odds-ratio and for the relative risk in a 2x2 table

PtProcess Time Dependent Point Process Modelling

PwrGSD Power in a Group Sequential Design

p3state.msm Analyzing survival data

pGLS Generalized Least Square in comparative Phylogenetics

pROC display and analyze ROC curves

pack Convert values to/from raw vectors

packClassic Toy example of Pack Classic

packS4 Toy example of S4 package

packdep Mapping dependencies among R packages

pairwiseCI Confidence intervals for two sample comparisons

palaeoSig Significance tests for palaeoenvironmental reconstructions

paleoMAS Paleoecological Analysis

paleoTS Analyze paleontological time-series

paloma Poisson Approximation for LOcal Motif Assessment

paltran WA, WA-PLS, MW for paleolimnology

pamctdp Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns

pamm Power analysis for random effects in mixed models

pamr Pam: prediction analysis for microarrays

pan Multiple imputation for multivariate panel or clustered data

panel Panel

papply Parallel apply function using MPI

paramlink Parametric linkage analysis

paran Horn's Test of Principal Components/Factors

parcor Regularized estimation of partial correlation matrices

parfossil Parallelized functions for palaeoecological and palaeogeographical analysis

parmigene Parallel Mutual Information estimation for Gene Network reconstruction

parser Detailed R source code parser

partDSA Partitioning using deletion, substitution, and addition moves

partitionMap Partition Maps

partitionMetric Compute a distance metric between two partitions of a set

partitions Additive partitions of integers

party A Laboratory for Recursive Partytioning

parviol Parviol

pastecs Package for Analysis of Space-Time Ecological Series

pathClass Classification using biological pathways as prior knowledge

pathmox Segmentation Trees in Partial Least Squares Path Modeling

pbapply Adding Progress Bar to '*apply' Functions

pbatR P2BAT

pbivnorm Vectorized Bivariate Normal CDF

pcaPP Robust PCA by Projection Pursuit

pcalg Estimation of CPDAG/PAG and causal inference using the IDA algorithm

pcse Panel-Corrected Standard Error Estimation in R

pcurve Principal curve analysis

pdfCluster Cluster analysis via nonparametric density estimation

pdist Partitioned Distance Function

pear Package for Periodic Autoregression Analysis

pec Prediction Error Curves for Survival Models

pedantics Functions to facilitate power and sensitivity analyses for genetic studies of natrual popualtions

pedigree Pedigree functions

pedigreemm Pedigree-based mixed-effects models

pegas Population and Evolutionary Genetics Analysis System

penalized L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model

penalizedLDA Penalized classification using Fisher's linear discriminant

penalizedSVM Feature Selection SVM using penalty functions

pencopula Flexible Copula Density Estimation with Penalized Hierarchical B-Splines

pendensity Density Estimation with a Penalized Mixture Approach

pensim Simulation of high-dimensional data and parallelized repeated penalized regression

peperr Parallelised Estimation of Prediction Error

pequod Moderated regression package

perm Exact or Asymptotic permutation tests

permax permax

permtest Permutation test to compare variability within and distance between two groups

perturb Tools for evaluating collinearity

pesticides Analysis of single serving and composite pesticide residue measurements

pfda Paired Functional Data Analysis

pgam Poisson-Gamma Additive Models

pgfSweave Quality speedy graphics compilation and caching with Sweave

pgirmess Data analysis in ecology

pglm panel generalized linear model

pgs Precision of Geometric Sampling

phangorn Phylogenetic analysis in R

pheatmap Pretty Heatmaps

pheno Auxiliary functions for phenological data analysis

phitest Nonparametric goodness-of-fit methods based on phi-divergences

phmm Proportional Hazards Mixed-effects Model (PHMM)

phpSerialize Serialize R to PHP associative array

phull p-hull: a generalization of convex hull, X-Y hull and bounding rectangle

phybase Basic functions for phylogenetic analysis

phyclust Phylogenetic Clustering (Phyloclustering)

phyext An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

phylobase Base package for phylogenetic structures and comparative data

phyloclim Integrating phylogenetics and climatic niche modelling

phylosim R packge for simulating biological sequence evolution

phylotools Phylogenetic tools for Eco-phylogenetics

phytools Phylogenetic Tools for comparative biology (and other things)

pi0 Estimating the proportion of true null hypotheses for FDR

picante R tools for integrating phylogenies and ecology

pixmap Bitmap Images (“Pixel Maps”)

pkDACLASS A complete statistical analysis of MALDI-TOF Mass Spectrometry Proteomics data

plRasch Log Linear by Linear Asscociation models

plan Tools for project planning

planar Multilayer optics

playitbyr Representing and exploring data through sound

playwith A GUI for interactive plots using GTK+

plgp Particle Learning of Gaussian Processes

plink IRT Separate Calibration Linking Methods

plm Linear Models for Panel Data

plotGoogleMaps Plot HTML output with Google Maps API and your own data

plotSEMM Graphing nonlinear latent variable interactions in SEMM

plotmo Plot a model's response while varying the values of the predictors

plotpc Plot principal component histograms around a scatter plot

plotrix Various plotting functions

pls Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR)

plsRcox Partial least squares Regression for Cox models and related techniques

plsRglm Partial least squares Regression for generalized linear models

plsdof Degrees of Freedom and Statistical Inference for Partial Least Squares Regression

plsgenomics PLS analyses for genomics

plspm Partial Least Squares Data Analysis Methods

plugdensity Plug-in Kernel Density Estimation

plus Penalized Linear Unbiased Selection

plyr Tools for splitting, applying and combining data

pmg Poor Man's GUI

pmlr Penalized Multinomial Logistic Regression

pmml Generate PMML for various models

pmr Probability Models for Ranking Data

png Read and write PNG images

poLCA Polytomous variable Latent Class Analysis

poibin The Poisson Binomial Distribution

poilog Poisson lognormal and bivariate Poisson lognormal distribution

poistweedie Poisson-Tweedie exponential family models

polspline Polynomial spline routines

polySegratio Simulate and test marker dosage for dominant markers in autopolyploids

polySegratioMM Bayesian mixture models for marker dosage in autopolyploids

polyapost Simulating from the Polya posterior

polycor Polychoric and Polyserial Correlations

polydect polydect

polynom A collection of functions to implement a class for univariate polynomial manipulations

polysat Tools for Polyploid Microsatellite Analysis

polytomous Polytomous logistic regression for fixed and mixed effects

pomp Statistical inference for partially observed Markov processes

pooh Partial Orders and Relations

popPK Summary of Population Pharmacokinetic Analysis

popbio Construction and analysis of matrix population models

popgen Statistical and Population Genetics

portes Portmanteau Tests for Time Series Models

portfolio Analysing equity portfolios

portfolioSim Framework for simulating equity portfolio strategies

potts Markov Chain Monte Carlo for Potts Models

powell Powell's UObyQA algorithm

powerGWASinteraction Power Calculations for Interactions for GWAS

powerMediation Power/Sample size calculation for mediation analysis

powerSurvEpi Power and sample size calculation for survival analysis of epidemiological studies

powerpkg Power analyses for the affected sib pair and the TDT design

ppMeasures Point pattern distances and prototypes

ppcor Partial and Semi-partial (Part) correlation

ppls Penalized Partial Least Squares

pps Functions for PPS sampling

ppstat Point Process Statistics

prLogistic Estimation of Prevalence Ratios using Logistic Models

prabclus Functions for clustering of presence-absence, abundance and multilocus genetic data

pracma Practical Numerical Math Functions

pragma Provides a pragma / directive / keyword syntax for R

predbayescor Classification rule based on Bayesian naive Bayes models with feature selection bias corrected

predmixcor Classification rule based on Bayesian mixture models with feature selection bias corrected

prefmod Utilities to fit paired comparison models for preferences

press Protein REsidue-level Structural Statistics

pressData Data sets for package PRESS–Protein REsidue-level Structural Statistics

prettyR Pretty descriptive stats

prim Patient Rule Induction Method (PRIM)

primer Functions and data for the forthcoming, A Primer of Ecology with R

princurve Fits a Principal Curve in Arbitrary Dimension

prob Elementary Probability on Finite Sample Spaces

probemapper Connects to QBRC's ProbeMapper platform

processdata Process Data

prodlim Product Limit Estimation

productplots NA

profdpm Profile Dirichlet Process Mixtures

profileModel Tools for profiling inference functions for various model classes

profr An alternative display for profiling information

proftools Profile Output Processing Tools for R

proj4 A simple interface to the PROJ.4 cartographic projections library

proptest Tests of the Proportional Hazards Assumption

proto Prototype object-based programming

protoclust Hierarchical clustering with prototypes

proxy Distance and Similarity Measures

pscl Political Science Computational Laboratory, Stanford University

pseudo Pseudo - observations

psgp Projected Spatial Gaussian Process (psgp) methods

pso Particle Swarm Optimization

pspearman Spearman's rank correlation test

pspline Penalized Smoothing Splines

psy Various procedures used in psychometry

psych Procedures for Psychological, Psychometric, and Personality Research

psychometric Applied Psychometric Theory

psychotree Recursive Partitioning Based on Psychometric Models

psyphy Functions for analyzing psychophysical data in R

ptinpoly Point-In-Polyhedron Test (3D)

ptw Parametric Time Warping

pvclass P-values for Classification

pvclust Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling

pwr Basic functions for power analysis

pwt Penn World Table

pxR PC-Axis with R

pycno Pycnophylactic Interpolation

pyramid Functions to draw population pyramid

QCA Qualitative Comparative Analysis

QCA3 Yet another package for Qualitative Comparative Analysis

QCAGUI QCA Graphical User Interface

QRMlib Provides R-language code to examine Quantitative Risk Management concepts

QSARdata Quantitative Structure Activity Relationship (QSAR) Data Sets

QT QT Knowledge Management System

QTLNetworkR Interactive software package for QTL visualization

QTLRel Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree

QuACN This package offers a set of topological network measures to analyze complex Networks structurally

QuantPsyc Quantitative Psychology Tools

qAnalyst Control Charts, Capability and Distribution Identification

qat Quality Assurance Toolkit

qcc Quality Control Charts

qgraph Network representations of relationships in data

qlspack Quasi Least Square Package

qp q-order partial correlation graph search algorithm

qpcR Modelling and analysis of real-time PCR data

qrnn Quantile regression neural network

qtl Tools for analyzing QTL experiments

qtlDesign Design of QTL experiments

qtlbim QTL Bayesian Interval Mapping

qtlbook Datasets for the R/qtl book

qtlmt Tools for mapping multiple complex traits

quadprog Functions to solve Quadratic Programming Problems

qualV Qualitative Validation Methods

qualityTools Statistical Methods for Quality Science

quantchem Quantitative chemical analysis: calibration and evaluation of results

quantmod Quantitative Financial Modelling Framework

quantreg Quantile Regression

quantregForest Quantile Regression Forests

quaternions Arithmetics and linear algebra with Quaternions

queueing Basic Markovian queueing models

qvalue Q-value estimation for false discovery rate control

qvcalc Quasi variances for factor effects in statistical models

R.cache Fast and light-weight caching (memoization) of objects

R.filesets Easy handling of and access to files organized in structured directories

R.huge Methods for accessing huge amounts of data [DEPRECATED]

R.matlab Read and write of MAT files together with R-to-Matlab connectivity

R.methodsS3 Utility function for defining S3 methods

R.oo R object-oriented programming with or without references

R.rsp Dynamic generation of scientific reports

R.utils Various programming utilities

R1magic Compressive Sampling: Sparse signal recovery utilities

R2Cuba Multidimensional Numerical Integration

R2HTML HTML exportation for R objects

R2PPT Simple R Interface to Microsoft PowerPoint using rcom

R2SWF Convert R Graphics to Flash Animations

R2WinBUGS Running WinBUGS and OpenBUGS from R / S-PLUS

R2jags A Package for Running jags from R

R2wd Write MS-Word documents from R

R4dfp 4dfp MRI Image Read and Write Routines

RAD Fit RAD models to biological data

RANN Fast Nearest Neighbour Search

RArcInfo Functions to import data from Arc/Info V7.x binary coverages

RAtmosphere Standard Atmosperic profiles

RBGL An interface to the BOOST graph library

RBerkeley R API to Oracle Berkeley DB

RBloomberg R/Bloomberg

RBrownie Continuous and discrete ancestral character reconstruction and evolutionary rate tests

RC Reproducible Computing

RColorBrewer ColorBrewer palettes

RCurl General network (HTTP/FTP/…) client interface for R

RDS R Functions for Respondent-Driven Sampling

RDieHarder R interface to the dieharder RNG test suite

REEMtree Regression Trees with Random Effects for Longitudinal (Panel) Data

REQS R/EQS Interface

RExcelInstaller Integration of R and Excel, (use R in Excel, read/write XLS files)

RFA Regional Frequency Analysis

RFLPtools Tools to analyse RFLP data

RFOC Graphics for Spherical Distributions and Earthquake Focal Mechanisms

RFinanceYJ RFinanceYJ

RFreak R/FrEAK interface

RGCCA Regularized Generalized Canonical Correlation Analysis

RGraphics Data and Functions from the book R Graphics, Second Edition

RGtk2 R bindings for Gtk 2.8.0 and above

RGtk2Extras Data frame editor and dialog making wrapper for RGtk2

RH2 DBI/RJDBC interface to h2 Database

RHRV Heart rate variability analysis of ECG data

RHmm Hidden Markov Models simulations and estimations

RISmed Search Pubmed, Make bibliographic content analyzable

RImageJ R bindings for ImageJ

RInside C++ classes to embed R in C++ applications

RItools Randomization inference tools

RJDBC Provides access to databases through the JDBC interface

RJSONIO Serialize R objects to JSON, JavaScript Object Notation

RJaCGH Reversible Jump MCMC for the analysis of CGH arrays

RKEA R/KEA interface

RLMM A Genotype Calling Algorithm for Affymetrix SNP Arrays

RLRsim Exact (Restricted) Likelihood Ratio tests for mixed and additive models

RLadyBug Analysis of Infectious Diseases using Stochastic Epidemic Models

RLastFM R interface to last.fm API

RM2 Revenue Management and Pricing Package

RMAWGEN RMAWGEN (R Multi-site Auto-regressive Weather GENeretor): a package to generate daily time series from monthly mean values

RMC Functions for fitting Markov models

RMTstat Distributions, Statistics and Tests derived from Random Matrix Theory

RMark R Code for MARK Analysis

RMediation An R Package for Mediation Analysis

RMySQL R interface to the MySQL database

RNCBI The java ncbi interface to R

RNCBIAxis2Libs Axis2 libraries for use in the R environment

RNCBIEUtilsLibs EUtils libraries for use in the R environment

RNCEP Obtain, organize, and visualize NCEP weather data

RNetCDF R Interface to NetCDF Datasets

RNetLogo Provides an interface to the agent-based modelling plattform NetLogo

RNiftyReg Medical image registration using the NiftyReg library

ROAuth R interface for OAuth

ROCR Visualizing the performance of scoring classifiers

ROCwoGS Non-parametric estimation of ROC curves without Gold Standard Test

RODBC ODBC Database Access

RODM R interface to Oracle Data Mining

ROptEst Optimally robust estimation

ROptEstOld Optimally robust estimation - old version

ROptRegTS Optimally robust estimation for regression-type models

ROracle Oracle database interface for R

ROracleUI Convenient Tools for Working with Oracle Databases

RPMG Graphical User Interface (GUI) for interactive R analysis sessions

RPMM Recursively Partitioned Mixture Model

RPPanalyzer Reads, annotates, and normalizes reverse phase protein array data

RPostgreSQL R interface to the PostgreSQL database system

RProtoBuf R Interface to the Protocol Buffers API

RPyGeo ArcGIS Geoprocessing in R via Python

RQDA R-based Qualitative Data Analysis

RQuantLib R interface to the QuantLib library

RSAGA SAGA Geoprocessing and Terrain Analysis in R

RSEIS Seismic Time Series Analysis Tools

RSNNS Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)

RSQLite SQLite interface for R

RSQLite.extfuns Math and String Extension Functions for RSQLite

RSVGTipsDevice An R SVG graphics device with dynamic tips and hyperlinks

RScaLAPACK A seamless interface to perform parallel computation on linear algebra problems using the ScaLAPACK library

RSearchYJ RSearchYJ

RSiena Siena - Simulation Investigation for Empirical Network Analysis

RSiteSearch RSiteSearch

RStackExchange R based StackExchange client

RSurvey Analysis of Spatially Distributed Data

RSvgDevice An R SVG graphics device

RTAQ RTAQ: Tools for the analysis of trades and quotes in R

RTOMO Visualization for seismic tomography

RTextTools Automatic Text Classification via Supervised Learning

RTisean R interface to Tisean algorithms

RUnit R Unit test framework

RVAideMemoire Diverse basic statistical and graphical functions accompanying the french book 'Aide-memoire de statistique appliquee a la biologie'

RWebMA RWebMA

RWeka R/Weka interface

RWekajars R/Weka interface jars

RWinEdt R-WinEdt

RXKCD Get XKCD comic from R

RXMCDA RXMCDA

RXshrink Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression

RadioSonde Tools for plotting skew-T diagrams and wind profiles

RandForestGUI RandForestGUI

RandVar Implementation of random variables

RandomFields Simulation and Analysis of Random Fields

RankAggreg Weighted rank aggregation

RaschSampler Rasch Sampler

Rassoc Robust tests for case-control genetic association studies

Ratings Model-based Ratings Figures

Rcapture Loglinear Models for Capture-Recapture Experiments

Rcgmin Conjugate gradient minimization of nonlinear functions with box constraints

Rcmdr R Commander

RcmdrPlugin.BCA Rcmdr Plug-In for Business and Customer Analytics

RcmdrPlugin.DoE R Commander Plugin for (industrial) Design of Experiments

RcmdrPlugin.EHESsampling Tools for sampling in European Health Examination Surveys (EHES)

RcmdrPlugin.Export Graphically export output to LaTeX or HTML

RcmdrPlugin.FactoMineR Graphical User Interface for FactoMineR

RcmdrPlugin.HH Rcmdr support for the HH package

RcmdrPlugin.IPSUR An IPSUR Plugin for the R Commander

RcmdrPlugin.KMggplot2 Rcmdr Plug-In for Kaplan-Meier Plot and Other Plots by Using the ggplot2 Package

RcmdrPlugin.MAc Meta-Analysis with Correlations (MAc) Rcmdr Plug-in

RcmdrPlugin.MAd Meta-Analysis with Mean Differences (MAd) Rcmdr Plug-in

RcmdrPlugin.PT Some discrete exponential dispersion models: Poisson-Tweedie

RcmdrPlugin.SLC SLC Rcmdr Plug-in

RcmdrPlugin.SensoMineR Graphical User Interface for SensoMineR

RcmdrPlugin.SurvivalT Rcmdr Survival Plug-In

RcmdrPlugin.TeachingDemos Rcmdr Teaching Demos Plug-In

RcmdrPlugin.TextMining Rcommander plugin for "tm" package

RcmdrPlugin.coin Rcmdr Coin Plug-In

RcmdrPlugin.depthTools R commander Depth Tools Plug-In

RcmdrPlugin.doex Rcmdr plugin for Stat 4309 course

RcmdrPlugin.epack Rcmdr plugin for time series

RcmdrPlugin.mosaic Adds menu items to produce mosaic plots and assoc plots to Rcmdr

RcmdrPlugin.orloca orloca Rcmdr Plug-in

RcmdrPlugin.qcc Rcmdr qcc Plug-In

RcmdrPlugin.qual Rcmdr plugin for quality control course

RcmdrPlugin.sos Efficiently search R Help pages

RcmdrPlugin.steepness Steepness Rcmdr Plug-in

RcmdrPlugin.survival R Commander Plug-in for the survival Package

Rcplex R interface to CPLEX

Rcpp Seamless R and C++ Integration

RcppArmadillo Rcpp integration for Armadillo templated linear algebra library

RcppBDT Rcpp bindings for the Boost Date_Time library

RcppClassic Deprecated 'classic' Rcpp API

RcppDE Global optimization by differential evolution in C++

RcppEigen Rcpp integration for the Eigen templated linear algebra library

RcppExamples Examples using Rcpp to interface R and C++

RcppGSL Rcpp integration for GNU GSL vectors and matrices

Rcsdp R interface to the CSDP semidefinite programming library

Rd2roxygen Convert Rd to roxygen documentation and utilities to improve documentation

Rdsm Threads Environment for R

ReacTran Reactive transport modelling in 1D, 2D and 3D

Read.isi Automated access to old World Fertility Survey data saved in fixed-width format based on ISI-formatted codebooks

ReadImages Image Reading Module for R

RecordLinkage Record Linkage in R

Records Record Values and Record Times

RelativeRisk Relative Risk

Reliability Functions for estimating parameters in software reliability models

Renext Renewal method for extreme values extrapolation

RepeatedHighDim Detection of global group effect in microarrays data

ResearchMethods Using GUIs to help teach statistics to non-statistics students

ResistorArray electrical properties of resistor networks

ResourceSelection Resource Selection (Probability) Functions for Use-Availability Data

Rfit Rank Estimation for Linear Models

Rfun Funy application of R

RghcnV3 Global Historical Climate Network Version 3

Rglpk R/GNU Linear Programming Kit Interface

RgoogleMaps Overlays on Google map tiles in R

Rhh Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation

RiDMC R interface to the idmclib library

Rigroup Rigroup: Provides small integer group functions

Rjms R messaging using ActiveMQ and jms

Rjmsjars Rjms jars

Rknots Rknots

Rlab Functions and Datasets Required for ST370 class

Rlabkey Data exchange between R and LabKey Server

Rmpfr R MPFR - Multiple Precision Floating-Point Reliable

Rmpi Interface (Wrapper) to MPI (Message-Passing Interface)

RnavGraph Using graphs as a navigational infrastructure

RnavGraphImageData Some image data used in the RnavGraph package demos

Rniftilib Rniftilib - R Interface to NIFTICLIB (V1.1.0)

RobAStBase Robust Asymptotic Statistics

RobLox Optimally robust influence curves and estimators for location and scale

RobLoxBioC Infinitesimally robust estimators for preprocessing omics data

RobRex Optimally robust influence curves for regression and scale

RobustAFT Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and logWeibull case

RobustRankAggreg Methods for robust rank aggregation

Rook Rook - a web server interface for R

Rpad Workbook-style, web-based interface to R

RpgSQL DBI/RJDBC interface to PostgreSQL Database

Rramas Matrix population models

Rserve Binary R server

Rsge Interface to the SGE Queuing System

Rsolnp General Non-linear Optimization

Rssa A collection of methods for singular spectrum analysis

Rstem Interface to Snowball implementation of Porter's word stemming algorithm

Rsundials Suite of Nonlinear Differential Algebraic Equations Solvers in R

Rsymphony Symphony in R

RthroughExcelWorkbooksInstaller Excel Workbooks supporting Statistics courses using 'R through Excel'

Runiversal Runiversal - Package for converting R objects to Java variables and XML

Runuran R interface to the UNU.RAN random variate generators

RunuranGUI A GUI for the UNU.RAN random variate generators

Rvelslant Downhole Seismic Analysis in R

Rvmmin Variable metric nonlinear function minimization with bounds constraints

Rwave Time-Frequency analysis of 1-D signals

Rwinsteps Running Winsteps in R

RxCEcolInf R x C Ecological Inference With Optional Incorporation of Survey Information

Ryacas R interface to the yacas computer algebra system

Rz GUI Tool for Data Management like SPSS or Stata

r2dRue 2d Rain Use Efficience model

r2lh R to LaTeX and HTML

r4ss R code for Stock Synthesis

rAverage Parameter estimation for the Averaging model of Information Integration Theory

rCUR CUR decomposition package

rChoiceDialogs rChoiceDialogs collection

rDNA R Bindings for the Discourse Network Analyzer

rEMM Extensible Markov Model (EMM) for Data Stream Clustering in R

rJPSGCS R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS)

rJava Low-level R to Java interface

rJavax rJava extensions

rJython R interface to Python via Jython

rPorta R/PORTA interface

rSymPy R interface to SymPy computer algebra system

rTOFsPRO Time-of-flight mass spectra signal processing

rWMBAT The William and Mary Bayesian Analysis Tool

race Racing methods for the selection of the best

rainbow Rainbow plots, bagplots and boxplots for functional data

rake Normalize sample weights using marginal total population weights

ramps Bayesian Geostatistical Modeling with RAMPS

randaes Random number generator based on AES cipher

random True random numbers using random.org

random.polychor.pa A Parallel Analysis With Polychoric Correlation Matrices

randomForest Breiman and Cutler's random forests for classification and regression

randomLCA Random Effects Latent Class Analysis

randomNames Random name generating function and data set

randomSurvivalForest Random Survival Forests

randtoolbox toolbox for pseudo and quasi random number generation and RNG tests

rangeMapper A platform for the study of macroecology of life history traits

rankhazard Rank-hazard plots

rasclass Supervised Raster Image Classification

raster Geographic analysis and modeling with raster data

rasterVis Visualization methods for the raster package

rateratio.test Exact rate ratio test

rattle Graphical user interface for data mining in R

rbenchmark Benchmarking routine for R

rbounds Perform Rosenbaum bounds sensitivity tests for matched data

rbugs Fusing R and OpenBugs

rcdd rcdd (Computational Geometry)

rcdk rcdk - Interface to the CDK Libraries

rcdklibs rcdklib - CDK libraries packaged for R

rcom R COM Client Interface and internal COM Server

rconifers R interface to the CONIFERS forest growth model

rda Shrunken Centroids Regularized Discriminant Analysis

rdatamarket Data access API for DataMarket.com

rdetools Relevant Dimension Estimation (RDE) in Feature Spaces

rdyncall Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)

readBrukerFlexData Reads mass spectrometry data in Bruker *flex format

readMzXmlData Reads mass spectrometry data in mzXML format

realized Realized

rebmix The Rebmix Package

recommenderlab Lab for Testing and Developing Recommender Algorithms for Binary Data

ref References for R

refund Regression with Functional Data

registry Registry infrastructure

reglogit Simulation-based Regularized Logistic Regression

regress Gaussian linear models with linear covariance structure

regsubseq Detect and Test Regular Sequences and Subsequences

regtest Regression testing

rela Item Analysis Package with Standard Errors

relaimpo Relative importance of regressors in linear models

relations Data Structures and Algorithms for Relations

relax relax – R Editor for Literate Analysis and lateX

relaxo Relaxed Lasso

reldist Relative Distribution Methods

relevent Relational Event Models

reliaR Package for some probability distributions

relimp Relative Contribution of Effects in a Regression Model

relsurv Relative survival

remMap Regularized Multivariate Regression for Identifying Master Predictors

remix Remix your data

repolr Repeated measures proportional odds logistic regression

reportr A general message and error reporting system

reporttools Generate LaTeX tables of descriptive statistics

reshape Flexibly reshape data

reshape2 Flexibly reshape data: a reboot of the reshape package

reshapeGUI A GUI for the reshape2 and plyr packages

review Manage Review Logs

revoIPC Shared memory parallel framework for multicore machines

reweight Adjustment of Survey Respondent Weights

rfPermute Estimate permutation p-values for importance metrics

rgam Robust Generalized Additive Model

rgcvpack R Interface for GCVPACK Fortran Package

rgdal Bindings for the Geospatial Data Abstraction Library

rgenoud R version of GENetic Optimization Using Derivatives

rgeos Interface to Geometry Engine - Open Source (GEOS)

rggobi Interface between R and GGobi

rgl 3D visualization device system (OpenGL)

rgp R genetic programming framework

rgr The GSC Applied Geochemistry EDA Package

rgrs Functions to make R usage in social sciences easier (in french)

rhosp Side effect risks in hospital : simulation and estimation

rich Species richness estimation and comparison

richards Richards curves

rimage Image Processing Module for R

rindex Indexing for R

ringscale Ringscale

rioja Analysis of Quaternary Science Data

risksetROC Riskset ROC curve estimation from censored survival data

rjags Bayesian graphical models using MCMC

rje Miscellaneous useful functions

rjson JSON for R

rlecuyer R interface to RNG with multiple streams

rmac calculate RMAC or FMAC agreement coefficients

rmeta Meta-analysis

rmetasim An individual-based population genetic simulation environment

rminer Simpler use of data mining methods (e.g. NN and SVM) in classification and regression

rms Regression Modeling Strategies

rneos rneos: XML-RPC Interface to NEOS

rngWELL toolbox for WELL random number generators

rngwell19937 WELL19937a random number generator implemented with 53 bit output

robCompositions Robust Estimation for Compositional Data

robeth R functions for robust statistics

robfilter Robust Time Series Filters

robust Insightful Robust Library

robustX eXperimental eXtraneous eXtraordinary … Functionality for Robust Statistics

robustbase Basic Robust Statistics

robustreg Robust Regression Functions

rocc ROC based classification

rocplus ROC, Precision-Recall, Convex Hull and other plots

rootSolve Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations

roxygen Literate Programming in R

roxygen2 In-source documentation for R

rpanel Simple Interactive Controls for R Using the tcltk Package

rpart Recursive Partitioning

rpart.plot Plot rpart models. An enhanced version of plot.rpart

rpartOrdinal Ordinal classification tree functions

rphast R interface to PHAST software for comparative genomics

rpsychi Statistics for psychiatric research

rpubchem rpubchem - Interface to the PubChem Collection

rpud R functions for computation on GPU

rpvm R interface to PVM (Parallel Virtual Machine)

rqmcmb2 Markov Chain Marginal Bootstrap for Quantile Regression

rrBLUP Ridge Regression-BLUP and related methods for genomic selection

rrcov Scalable Robust Estimators with High Breakdown Point

rrcovNA Scalable Robust Estimators with High Breakdown Point for Incomplete Data

rrdf rrdf - support for the Resource Description Framework

rrdflibs rrdflibs - package with Jena libraries for use with rrdf

rredis Redis client for R

rrp Random Recursive Partitioning

rrules Generic rule engine for R

rrv Random Return Variables

rsae Robust Small Area Estimation

rscproxy statconn: provides portable C-style interface to R (StatConnector)

rsdepth Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis

rseedcalc Estimation of Proportion of GM Stacked Seeds in Seed Lots

rsm Response-surface analysis

rsprng R interface to SPRNG (Scalable Parallel Random Number Generators)

rstream Streams of random numbers

rtape Manage and manipulate large collections of R objects stored as tape-like files

rtfbs R Transcription Factor Binding Site identification tool

rtiff A tiff reader for R

rtv Random Time Variables

runjags Interface utilities for JAGS (using BUGS syntax) and Apple Xgrid distributed computing clusters

rv Simulation-based random variable object class in R

rvgtest Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators

rvmbinary RVM Binary Classification

rwm R Workspace Management

rworldmap For mapping global data : rworldmap

rwt Rice Wavelet Toolbox wrapper

rysgran Grain size analysis, textural classifications and distribuition of uncosolidated sediments

SAFD Statistical Analysis of Fuzzy Data

SAPP Statistical Analysis of Point Processes

SASPECT Significant AnalysiS of PEptide CounTs

SASmixed Data sets from "SAS System for Mixed Models"

SASxport Read and Write SAS XPORT Files

SBSA Simplified Bayesian Sensitivity Analysis

SDDA Stepwise Diagonal Discriminant Analysis

SDMTools Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

SDaA Sampling: Design and Analysis

SDisc Integrated methodology for the identification of homogeneous profiles in data distribution

SE.IGE Standard errors of estimated genetic parametes

SEL Semiparametric elicitation

SEMModComp Model Comparisons for SEM

SGCS Spatial Graph based Clustering Summaries for spatial point patterns

SGP An R Package for the Calculation and Visualization of Student Growth Percentiles

SHARE SNP-Haplotype Adaptive REgression (SHARE)

SHIP SHrinkage covariance Incorporating Prior knowledge

SII Calculate ANSI S3.5-1997 Speech Intelligibility Index

SIN A SINful Approach to Selection of Gaussian Graphical Markov Models

SIS Sure Independence Screening

SLC Slope and level change

SMCP Smoothed minimax concave penalization (SMCP) method for genome-wide association studies

SMIR Companion to Statistical Modelling in R

SMPracticals Practicals for use with Davison (2003) Statistical Models

SMVar Structural Model for variances

SNPRelate Parallel Computing Toolset for genome-wide association studies

SNPassoc SNPs-based whole genome association studies

SNPmaxsel Maximally selected statistics for SNP data

SOAR Memory management in R by delayed assignments

SPACECAP A Program to Estimate Animal Abundance and Density using Spatially-Explicit Capture-Recapture

SPARQL SPARQL client

SPECIES Statistical package for species richness estimation

SPIAssay A genetic-based assay for the identification of cell lines

SPOT Sequential Parameter Optimization

SQLiteDF Stores data frames & matrices in SQLite tables

SQLiteMap Wrapper to spatialite functions

SQN subset quantile normalization

SQUAREM Squared extrapolation methods for accelerating fixed-point iterations

SRPM Shared Reproducibility Package Management

SSSR Server Side Scripting with R

SSsimple State space models

STAR Spike Train Analysis with R

SV Quasi-likelihood and indirect inference in non-Gaussian stochastic volatility models

SVGMapping Map experimental data on custom-made SVG file

SVMMaj SVMMaj algorithm

SWordInstaller SWord: Use R in Microsoft Word (Installer)

SYNCSA SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities

SampleSizeMeans Sample size calculations for normal means

SampleSizeProportions Calculating sample size requirements when estimating the difference between two binomial proportions

SamplerCompare A framework for comparing the performance of MCMC samplers

SamplingStrata Optimal stratification of sampling frames for multipurpose sampling surveys

SciViews SciViews GUI API - Main package

ScottKnott The ScottKnott Clustering Algoritm

SearchTrees Spatial Search Trees

SemiPar Semiparametic Regression

SemiParBIVProbit Semiparametric Bivariate Probit Modelling

SenSrivastava Datasets from Sen & Srivastava

SensoMineR Sensory data analysis with R

SeqKnn Sequential KNN imputation method

SiZer SiZer: Significant Zero Crossings

SigWinR SigWin-detector implementation in R

Sim.DiffProc Simulation of Diffusion Processes

Sim.DiffProcGUI Graphical User Interface for Simulation of Diffusion Processes

SimComp Simultaneous Comparisons for Multiple Endpoints

SimpleTable Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding

SimultAnR Correspondence and Simultaneous Analysis

SixSigma Six Sigma Tools for Quality and Process Improvement

SkewHyperbolic The Skew Hyperbolic Student t-distribution

Sleuth2 Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)"

SlimPLS SlimPLS multivariate feature selection

Snowball Snowball Stemmers

SoDA Functions and Exampels for "Software for Data Analysis"

SortableHTMLTables Turns a data frame into an HTML file containing a sortable table

SparseM Sparse Linear Algebra

SpatialEpi Performs various spatial epidemiological analyses

SpatialExtremes Modelling Spatial Extremes

SpatialNP Multivariate nonparametric methods based on spatial signs and ranks

SpatioTemporal Spatio-Temporal Model Estimation

SpeciesMix Fit Mixtures of Archetype species

SpectralGEM Discovering Genetic Ancestry Using Spectral Graph Theory

SpherWave Spherical Wavelets and SW-based Spatially Adaptive Methods

StMoSim Simulate QQ-Norm-Plot

StatDA Statistical Analysis for Environmental Data

StatDataML implementation of the StatDataML proposal

StatFingerprints StatFingerprints

StatMatch Statistical Matching

Stem Spatio-temporal models in R

StreamMetabolism Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves

SubpathwayMiner A software package for annotation and identification of the KEGG pathways

SuppDists Supplementary distributions

SweaveListingUtils Utilities for Sweave together with TeX listings package

SwissAir Air Quality Data of Switzerland for one year in 30 min Resolution

SyNet Inference and Analysis of Sympatry Networks

Synth Synthetic Control Group Method for Comparative Case Studies

s20x Stats 20x

s3x Enhanced S3-Based Programming

s4vd Biclustering via sparse singular value decomposition incorporating stability selection

sBF Smooth Backfitting

sabreR Multivariate Generalized Linear Mixed Models

sac Semiparametric Analysis of Changepoint

saemix Stochastic Approximation Expectation Maximization (SAEM) algorithm

safeBinaryRegression Safe Binary Regression

sampSurf Sampling Surface Simulation for Areal Sampling Methods

sampfling Sampford sampling (w/o replacement and unequal probabilities)

sampleSelection Sample Selection Models

samplesize a collection of sample size functions

sampling Survey Sampling

samplingbook Survey Sampling Procedures

samr SAM: Significance Analysis of Microarrays

sandwich Robust Covariance Matrix Estimators

sapa Insightful Spectral Analysis for Physical Applications

sas7bdat SAS Database Reader (experimental)

satin Functions for reading and displaying satellite data for oceanographic applications with R

saves Fast load variables

saws Small-Sample Adjustments for Wald tests Using Sandwich Estimators

sbgcop Semiparametric Bayesian Gaussian copula estimation and imputation

sca Simple Component Analysis

scaRabee Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models

scagnostics Compute scagnostics - scatterplot diagnostics

scaleCoef Scale regression coefficients

scaleboot Approximately Unbiased P-values via Multiscale Bootstrap

scape Statistical Catch-at-Age Plotting Environment

scapeMCMC MCMC Diagnostic Plots

scatterplot3d 3D Scatter Plot

schoolmath Functions and datasets for math used in school

schwartz97 A package on the Schwartz two-factor commodity model

sciplot Scientific Graphing Functions for Factorial Designs

scout Implements the Scout method for Covariance-Regularized Regression

scrapeR Tools for Scraping Data from HTML and XML Documents

scrime Analysis of High-Dimensional Categorical Data such as SNP Data

scriptests Transcript-based unit tests that are easy to create and maintain

scuba Scuba diving calculations and decompression models

sculpt3d A simple toolbar GUI for brushing RGL plots

sda Shrinkage Discriminant Analysis and CAT Score Variable Selection

sdcMicro Statistical Disclosure Control methods for the generation of public- and scientific-use files

sdcMicroGUI Graphical user interface for package sdcMicro

sdcTable statistical disclosure control for tabular data

sddpack Semidiscrete Decomposition

sde Simulation and Inference for Stochastic Differential Equations

sdef Synthesizing List of Differentially Expressed Features

sdtalt Signal detection theory and alternatives

sdtoolkit Scenario Discovery Tools to Support Robust Decision Making

seacarb seawater carbonate chemistry with R

seas Seasonal analysis and graphics, especially for climatology

season Seasonal analysis of health data

secr Spatially explicit capture-recapture

seewave Time wave analysis and graphical representation

seg A set of tools for residential segregation research

segclust SegClust : a package for Segmentation and Segmentation/Clustering

segmented Segmented relationships in regression models

selectMeta Estimation of weight functions in meta analysis

selectiongain gain of a model selection

sem Structural Equation Models

semPLS Structural Equation Modeling Using Partial Least Squares

sendmailR send email using R

sendplot Tool for sending interactive plots with tool-tip content

sensR Thurstonian models for sensory discrimination

sensitivity Sensitivity Analysis

sensitivityPStrat Principal Stratification Sensitivity Analysis Functions

separationplot Separation Plots

seqCBS CN Profiling using Sequencing and CBS

seqRFLP Simulation and visualization of restriction enzyme cutting pattern from DNA sequences

seqinr Biological Sequences Retrieval and Analysis

seqmon Sequential Monitoring of Clinical Trials

seriation Infrastructure for seriation

session Functions for interacting with, saving and restoring R sessions

setRNG Set (Normal) Random Number Generator and Seed

sets Sets, Generalized Sets, Customizable Sets and Intervals

sfa Stochastic Frontier Analysis

sfsmisc Utilities from Seminar fuer Statistik ETH Zurich

sgeostat An Object-oriented Framework for Geostatistical Modeling in S+

shape Functions for plotting graphical shapes, colors

shapefiles Read and Write ESRI Shapefiles

shapes Statistical shape analysis

sharx Models and Data Sets for the Study of Species-Area Relationships

siar Stable Isotope Analysis in R

siatclust Shenzhen Institutes of Advanced Technology Clustering Suite

sideChannelAttack Side Channel Attack

sifds Swedish inflation forecast data set

sigclust Statistical Significance of Clustering

signal Signal processing

signalextraction Real-Time Signal Extraction (Direct Filter Approach)

simFrame Simulation framework

simPopulation Simulation of synthetic populations for surveys based on sample data

simba A Collection of functions for similarity analysis of vegetation data

simboot Simultaneous Confidence Intervals and Adjusted p–values for Diversity Indices

simco A package to import Structure files and deduce similarity coefficients from them

simctest Sequential (or Safe) Implementation of Monte Carlo tests with uniformly bounded resampling risk

simecol Simulation of ecological (and other) dynamic systems

simex SIMEX- and MCSIMEX-Algorithm for measurement error models

simexaft simexaft

similarityRichards Similarity of Richards curves

simone Statistical Inference for MOdular NEtworks (SIMoNe)

simpleboot Simple Bootstrap Routines

sinartra A simple web app framework for R, based on sinatra

sisus SISUS: Stable Isotope Sourcing using Sampling

skellam Skellam distribution

skewt The Skewed Student-t Distribution

skills Skills in Knowledge Space Theory

skmeans Spherical k-Means Clustering

slam Sparse Lightweight Arrays and Matrices

sm Smoothing methods for nonparametric regression and density estimation

smacof SMACOF for Multidimensional Scaling

smatr (Standardised) Major Axis Estimation and Testing Routines

smco A simple Monte Carlo optimizer using adaptive coordinate sampling

smirnov Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book

smoothSurv Survival Regression with Smoothed Error Distribution

smoothmest Smoothed M-estimators for 1-dimensional location

smoothtail Smooth Estimation of GPD Shape Parameter

sn The skew-normal and skew-t distributions

sna Tools for Social Network Analysis

snort Social Network-Analysis On Relational Tables

snow Simple Network of Workstations

snowFT Fault Tolerant Simple Network of Workstations

snowfall Easier cluster computing (based on snow)

snp.plotter snp.plotter

snpXpert Tools to analysis SNP data

softclassval Soft classification performance measures

soil.spec Soil spectral data exploration and regression functions

soiltexture Functions for soil texture plot, classification and transformation

solaR Solar Photovoltaic Systems

som Self-Organizing Map

soma General-purpose optimisation with the Self-Organising Migrating Algorithm

someKfwer Controlling the Generalized Familywise Error Rate

someMTP Some Multiple Testing Procedures

somplot Visualisation of hexagonal Kohonen maps

sos sos

sos4R An R client for the OGC Sensor Observation Service

sound A Sound Interface for R

sp classes and methods for spatial data

spBayes Univariate and Multivariate Spatial Modeling

spa Implements The Sequential Predictions Algorithm

spaa SPecies Association Analysis

space Sparse PArtial Correlation Estimation

spacetime classes and methods for spatio-temporal data

spacodiR Spatial and Phylogenetic Analysis of Community Diversity

spam SPArse Matrix

sparcl Perform sparse hierarchical clustering and sparse k-means clustering

sparkTable Sparklines and graphical tables for tex and html

sparr The sparr package: SPAtial Relative Risk

sparseLDA Sparse Discriminant Analysis

spatcounts Spatial count regression

spatgraphs Graphs for spatial point patterns

spatial Functions for Kriging and Point Pattern Analysis

spatialCovariance Computation of spatial covariance matrices for data on rectangles

spatialkernel Nonparameteric estimation of spatial segregation in a multivariate point process

spatialsegregation Segregation measures for multitype spatial point patterns

spatstat Spatial Point Pattern analysis, model-fitting, simulation, tests

spc Statistical Process Control

spcosa Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata

spd Semi Parametric Distribution

spdep Spatial dependence: weighting schemes, statistics and models

spe Stochastic Proximity Embedding

spectralGP Approximate Gaussian processes using the Fourier basis

speedR A GUI based importing and filtering tool

speedRlibTF speedR's table filter library

speedRlibs Package containing the required libraries (jars) for speedR

speedglm Fitting Linear and Generalized Linear Models to large data sets

spef Semiparametric estimating functions

speff2trial Semiparametric efficient estimation for a two-sample treatment effect

sperich Auxiliary functions to estimate centers of biodiversity

spgrass6 Interface between GRASS 6+ geographical information system and R

spgwr Geographically weighted regression

sphet Spatial Models with heteroskedastic innovations

spi Compute SPI index

spikeSlabGAM Bayesian variable selection and model choice for generalized additive mixed models

spikeslab Prediction and variable selection using spike and slab regression

splancs Spatial and Space-Time Point Pattern Analysis

splinesurv Nonparametric bayesian survival analysis

spls Sparse Partial Least Squares (SPLS) Regression and Classification

splus2R S-PLUS functionality missing from R

sporm Semiparametric proportional odds rate model

sprint Simple Parallel R INTerface

spssDDI Read SPSS System files and produce valid DDI Version 3.0 documents

spsurvey Spatial Survey Design and Analysis

spuRs Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"

sqldf Perform SQL Selects on R Data Frames

squash Color-based plots for multivariate visualization

sra Selection Response Analysis

ssanv Sample Size Adjusted for Nonadherence or Variability of input parameters

ssize.fdr Sample Size Calculations for Microarray Experiments

sspir State Space Models in R

sspline Smoothing Splines on the Sphere

st Shrinkage t Statistic and CAT Score

stab data analysis of drug stability for shelf life estimation

stabledist Stable Distribution Functions

stam Spatio-Temporal Analysis and Modelling

startupmsg Utilities for start-up messages

stashR A Set of Tools for Administering SHared Repositories

statmod Statistical Modeling

statnet Software tools for the Statistical Modeling of Network Data

steepness Testing Steepness of Dominance Hierarchies

stepPlr L2 penalized logistic regression with a stepwise variable selection

stepp Subpopulation Treatment Effect Pattern Plot (STEPP)

stepwise Stepwise detection of recombination breakpoints

stinepack Stineman, a consistently well behaved method of interpolation

stochmod Stochastic Modeling

stockPortfolio Build stock models and analyze stock portfolios

stoichcalc R Functions for Solving Stoichiometric Equations

stratasphere Stratified Spherical Approximate Conditional Modeling

stratification Univariate Stratification of Survey Populations

stratigraph Toolkit for the plotting and analysis of stratigraphic and palaeontological data

stream.net Building and analyzing binary stream networks

stringkernels String Kernel Methods for kernlab

stringr Make it easier to work with strings

strucchange Testing, Monitoring, and Dating Structural Changes

subplex Subplex optimization algorithm

subselect Selecting variable subsets

sudoku Sudoku Puzzle Generator and Solver

sugaR Plots to help optimising diabetes therapy

supclust Supervised Clustering of Predictor Variables such as Genes

superMDS Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)

superpc Supervised principal components

support.CEs Basic functions for supporting an implementation of choice experiments

surv2sample Two-Sample Tests for Survival Analysis

survAUC Estimators of prediction accuracy for time-to-event data

survBayes Fits a proportional hazards model to time to event data by a Bayesian approach

survJamda Survival prediction by joint analysis of microarray gene expression data

survJamda.data survJamda.data

survPresmooth Presmoothed Estimation in Survival Analysis

surveillance Modeling and monitoring discrete response time series

survey analysis of complex survey samples

survival Survival analysis, including penalised likelihood

survivalBIV Estimation of the bivariate distribution function

survivalROC Time-dependent ROC curve estimation from censored survival data

survrec Survival analysis for recurrent event data

svDialogs SciViews GUI API - Dialog boxes

svGUI SciViews GUI API - Functions to manage GUI client

svIDE SciViews GUI API - IDE and code editor functions

svMisc SciViews GUI API - Miscellaneous functions

svSocket SciViews GUI API - R Socket Server

svSweave SciViews GUI API - Sweave functions

svTools SciViews GUI API - Tools (wrapper for packages tools and codetools)

svUnit SciViews GUI API - Unit testing

svWidgets SciViews GUI API - Widgets & Windows

svcR svcR package

svcm 2d and 3d Space-Varying Coefficient Models

svd Interfaces to various state-of-art SVD and eigensolvers

svmpath svmpath: the SVM Path algorithm

swamp Analysis and visualization of high-dimensional data in respect to sample annotations

symbols Symbol plots

symmoments Symbolic Central Moments of the Multivariate Normal Distribution

synchronicity Boost mutex functionality for R

systemfit Estimating Systems of Simultaneous Equations

TAHMMAnnot Mixture model approach to compare two samples of Tiling Array data

TANOVA Time Course Analysis of Variance for Microarray

TEQR Target Equavelence Range Design

TERAplusB Test for A+B Traditional Escalation Rule

TGUICore Teaching GUI - Core functionality

TGUITeaching Teaching GUI - prototype

TIMP a problem solving environment for fitting separable nonlinear models in physics and chemistry applications

TRAMPR TRFLP Analysis and Matching Package for R

TRIANG Symmetric discrete triangular distributions

TRIANGG General discrete triangular distribution

TSA Time Series Analysis

TSAgg Time series Aggregation

TSHRC Two Stage Hazard Rate Comparison

TSMySQL Time Series Database Interface extensions for MySQL

TSP Traveling Salesperson Problem (TSP)

TSPostgreSQL Time Series Database Interface extensions for PostgreSQL

TSSQLite Time Series Database Interface extentions for SQLite

TSdbi Time Series Database Interface

TSfame Time Series Database Interface extensions for fame

TSgetSymbol Time Series Database Interface extension to connect with getSymbols

TShistQuote Time Series Database Interface extensions for get.hist.quote

TSodbc Time Series Database Interface extensions for ODBC

TSpadi Time Series Database Interface extensions for PADI Time Series Server

TSxls Time Series Database Interface extension to connect to spreadsheets

TSzip Time Series Database Interface extension to connect to zip files

TTR Technical Trading Rules

TWIX Trees WIth eXtra splits

TauP.R Earthquake Traveltime Calculations for 1-D Earth Models

TeachingDemos Demonstrations for teaching and learning

TeachingSampling Sampling designs and parameter estimation in finite population

ThreeGroups ML Estimator for Baseline-Placebo-Treatment (Three-group) designs

TilePlot Characterization of functional genes in complex microbial communities using tiling DNA microarrays

Tinflex Tinflex - Universal non-uniform random number generator

TinnR Resources of Tinn-R GUI/Editor for R Environment

ToxLim Incorporating Ecological Data and Associated Uncertainty in Bioaccumulation Modeling

TraMineR Sequences and trajectories mining for social scientists

TradeStrategyAnalyzer Trade Strategy Analyzer

TreePar Estimating speciation and extinction rates based on phylogenies

TreeRank TreeRank

TreeSim Simulating trees under the birth-death model

TripleR Social Relation Model (SRM) analyses for single or multiple round-robin groups

TunePareto Multi-objective parameter tuning for classifiers

TwoPhaseInd Two-Phase Independence

TwoStepCLogit Conditional logistic regression: A two-step estimation method

TwoWaySurvival Additiv Two-Way Hazards Modelling of Right Censored Survival Data

taRifx Collection of utility and convenience functions, and some interesting spatial functions

tableplot Represents tables as semi-graphic displays

tabplot Tableplot, a visualization of large statistical datasets

taskPR Task-Parallel R Package

tau Text Analysis Utilities

tawny Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators

tcltk2 Tcl/Tk Additions

tclust Robust Trimmed Clustering

tdm A Tool for Therapeutic Drug Monitoring (TDM)

tdthap TDT tests for extended haplotypes

tensor Tensor product of arrays

tensorA Advanced tensors arithmetic with named indices

termstrc Zero-coupon Yield Curve Estimation

testthat Testthat code. Tools to make testing fun :)

texmex Threshold exceedences and multivariate extremes

textcat N-Gram Based Text Categorization

textir Inverse Regression for Text Analysis

tfer Forensic Glass Transfer Probabilities

tframe Time Frame coding kernel

tframePlus Time Frame coding kernel extensions

tgp Bayesian treed Gaussian process models

tgram Functions to compute and plot tracheidograms

thgenetics Genetic Rare Variants Tests

tiger TIme series of Grouped ERrors

tikzDevice A Device for R Graphics Output in PGF/TikZ Format

tileHMM Hidden Markov Models for ChIP-on-Chip Analysis

time Time tracking for developers

timeDate Rmetrics - Chronological and Calendarical Objects

timeSeries Rmetrics - Financial Time Series Objects

timeordered Time-ordered and time-aggregated network analyses

timereg timereg package for Flexible regression models for survival data

timsac TIMe Series Analysis and Control package

tis Time Indexes and Time Indexed Series

titan Titration analysis for mass spectrometry data

tkrgl TK widget tools for rgl package

tkrplot TK Rplot

tlemix Trimmed Maximum Likelihood Estimation

tlnise Two-level normal independent sampling estimation

tm Text Mining Package

tm.plugin.dc Text Mining Distributed Corpus Plug-In

tm.plugin.mail Text Mining E-Mail Plug-In

tmle Targeted Maximum Likelihood Estimation of additive treatment effect

tmvtnorm Truncated Multivariate Normal and Student t Distribution

tnet tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks

tolerance Functions for calculating tolerance intervals

tonymisc Functions for Econometrics Output

topicmodels Topic models

topmodel Implementation of the hydrological model TOPMODEL in R

topologyGSA topologyGSA

tourr Implement tour methods in pure R code

tourrGui A Tour GUI using gWidgets

tpr Temporal Process Regression

track Track Objects

trackObjs Track Objects

tractor.base A package for reading, manipulating and visualising magnetic resonance images

traitr An interface for creating GUIs modeled in part after traits UI module for python

trapezoid The Trapezoidal Distribution

tree Classification and regression trees

treecm Estimating and plotting the centre of mass of a tree

treelet Treelet

treemap Treemap visualization

treethresh Methods for Tree-based Local Adaptive Thresholding

trex Truncated exact test for two-stage case-control design for studying rare genetic variants

triads Triad census for networks

triangle Provides the standard distribution functions for the triangle distribution

trifield Some basic facilities for ternary fields and plots

triggr Fast, simple RPC controller for R

trimcluster Cluster analysis with trimming

trio Detection of disease-associated SNP interactions in case-parent trio data

trip Spatial analysis of animal track data

tripEstimation Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes

tripack Triangulation of irregularly spaced data

truncSP Semi-parametric estimators of truncated regression models

truncgof GoF tests allowing for left truncated data

truncnorm Truncated normal distribution

truncreg Truncated Regression Models

trust Trust Region Optimization

tsDyn Nonlinear time series models with regime switching

tsModel Time Series Modeling for Air Pollution and Health

tseries Time series analysis and computational finance

tseriesChaos Analysis of nonlinear time series

tsfa Time Series Factor Analysis

tslars Least angle regression for time series analysis

tsne T-distributed Stochastic Neighbor Embedding for R (t-SNE)

ttime Translate Neurodevelopmental Event Timing Across Species

ttrTests Standard Backtests for Technical Trading Rules in Financial Data

ttutils Utility functions

tuneR Analysis of music and speech

twang Toolkit for Weighting and Analysis of Nonequivalent Groups

tweedie Tweedie exponential family models

twiddler Interactive manipulation of R expressions

twitteR R based Twitter client

two.stage.boot Two-stage cluster sample bootstrap algorithm

twopartqtl QTL Mapping for Point-mass Mixtures

twslm A two-way semilinear model for normalization and analysis of cDNA microarray data

txtplot Text based plots

USPS Unsupervised and Supervised methods of Propensity Score Adjustment for Bias

UScensus2000 US Census 2000 Suite of R Packages

UScensus2000add US Census 2000 Suite of R Packages: Demographic Add

UScensus2000blkgrp US Census 2000 Block Group Shapefiles and Additional Demographic Data

UScensus2000cdp US Census 2000 Designated Places Shapefiles and Additional Demographic Data

UScensus2000tract US Census 2000 Tract Level Shapefiles and Additional Demographic Data

Unicode Unicode data and utilities

UsingR Data sets for the text "Using R for Introductory Statistics"

ucminf General-purpose unconstrained non-linear optimization

udunits2 udunits-2 bindings for R

ump Uniformly Most Powerful Tests

unbalhaar Function estimation via Unbalanced Haar wavelets

uncompress Uncompress

uniCox Univarate shrinkage prediction in the Cox model

uniPlot Uniforms and customizes plots of packages ggplot2, graphics and lattice

unknownR You didn't know you didn't know?

unmarked Models for Data from Unmarked Animals

untb ecological drift under the UNTB

urca Unit root and cointegration tests for time series data

urn Urn : Sampling Without Replacement

VBmix Variational Bayesian mixture models

VGAM Vector Generalized Linear and Additive Models

VHDClassification Discrimination/Classification in very high dimension with linear and quadratic rules

VIF VIF Regression: A Fast Regression Algorithm For Large Data

VIM Visualization and Imputation of Missing Values

VLMC VLMC – Variable Length Markov Chains

VPdtw Variable Penalty Dynamic Time Warping

VarianceGamma The Variance Gamma Distribution

Vdgraph This package creates variance dispersion graphs for response surface designs

VecStatGraphs2D Vector analysis using graphical and analytical methods in 2D

VecStatGraphs3D Vector analysis using graphical and analytical methods in 3D

VennDiagram Generate high-resolution Venn and Euler plots

VhayuR Vhayu R Interface

VisCov Visualizing of distributions of covariance matrices

VizCompX Visualisation of Computer Models

validator External and Internal Validation Indices

varSelRF Variable selection using random forests

varSelectIP Objective Bayes Model Selection

varcompci VARCOMPCI: A Package for Computation of Confidence Intervals for Variance Components of Mixed Models in R

vardiag A package for variogram diagnostics

vars VAR Modelling

vcd Visualizing Categorical Data

vcdExtra vcd additions

vegan Community Ecology Package

vegclust Fuzzy clustering of vegetation data

vegdata Functions to access vegetation databases (Turboveg and VegetWeb) and prepare data for analysis

vegetarian Jost Diversity Measures for Community Data

venneuler Venn and Euler Diagrams

verification Forecast verification utilities

vines Multivariate Dependence Modeling with Vines

violinmplot Combination of violin plot with mean and standard deviation

vioplot Violin plot

viopoints 1-D Scatter Plots with Jitter Using Kernel Density Estimates

visualizationTools Package contains a few functions to visualize statistical circumstances

vmv Visualization of Missing Values

voronoi Methods and applications related to Voronoi tessellations

vowels Vowel Manipulation, Normalization, and Plotting

vrmlgen Generate 3D visualizations for data exploration on the web

vrtest Variance Ratio tests and other tests for Martigale Difference Hypothesis

vwr Useful functions for visual word recognition research

WDI World Development Indicators (World Bank)

WGCNA Weighted Gene Co-Expression Network Analysis

WINRPACK Read in WIN format data

WMBrukerParser William and Mary Parser For Bruker-Ultraflex Mass Spec Data

WMCapacity GUI implementing Bayesian working memory models

WMTregions Exact Calculation of WMTR

WWGbook Functions and datasets for WWGbook

WaveCD Wavelet change point detection for array CGH data

WaveletCo Wavelet Coherence Analysis

WhatIf WhatIf: Software for Evaluating Counterfactuals

WilcoxCV Wilcoxon-based variable selection in cross-validation

WriteXLS Cross-platform Perl based R function to create Excel 2003 (XLS) files

wSVM Weighted SVM with boosting algorithm for improving accuracy

walkscoreAPI Walk Score and Transit Score API

wasim Visualisation and analysis of output files of the hydrological model WASIM

waterfall Waterfall Charts in R

waveband Computes credible intervals for Bayesian wavelet shrinkage

waveclock Time-frequency analysis of cycling cell luminescence data

waved Wavelet Deconvolution

wavelets A package of funtions for computing wavelet filters, wavelet transforms and multiresolution analyses

wavemulcor Wavelet routine for multiple correlation

waveslim Basic wavelet routines for one-, two- and three-dimensional signal processing

wavethresh Wavelets statistics and transforms

wccsom SOM networks for comparing patterns with peak shifts

websockets HTML 5 Websocket Interface for R

weights Weighting and Weighted Statistics

weirs A Hydraulics Package to Compute Open-Channel Flow over Weirs

wgaim Whole Genome Average Interval Mapping for QTL detection using mixed models

wikibooks Functions and datasets of the german WikiBook "GNU R"

wild1 R Tools for Wildlife Research and Management

wle Weighted Likelihood Estimation

wmtsa Insightful Wavelet Methods for Time Series Analysis

wnominate WNOMINATE Roll Call Analysis Software

wombsoft Wombling Computation

wordcloud Word Clouds

wordnet WordNet Interface

wq Exploring water quality monitoring data

write.snns Function for exporting data to SNNS pattern files

wvioplot Weighted violin plot

XLConnect Excel Connector for R

XLConnectJars JAR dependencies for the XLConnect package

XML Tools for parsing and generating XML within R and S-Plus

x12 X12 - wrapper function and GUI

xgobi Interface to the XGobi and XGvis programs for graphical data analysis

xgrid Access Apple Xgrid using R

xlsReadWrite Read and write Excel files (.xls)

xlsx Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files

xlsxjars Package required jars for the xlsx package

xpose4 Xpose 4

xpose4classic Xpose 4 Classic Menu System

xpose4data Xpose 4 Data Functions Package

xpose4generic Xpose 4 Generic Functions Package

xpose4specific Xpose 4 Specific Functions Package

xtable Export tables to LaTeX or HTML

xterm256 Support for xterm256 escape sequences

xtermStyle Basic text formatting using xterm escape sequences

xts eXtensible Time Series

YaleToolkit Data exploration tools from Yale University

YieldCurve Modelling and estimation of the yield curve

YjdnJlp Text Analysis by Yahoo! Japan Develper Network

YourCast YourCast

yaImpute yaImpute: An R Package for k-NN Imputation

yacca Yet Another Canonical Correlation Analysis Package

yaml Methods to convert R to YAML and back

yest Gaussian Independence Models

yhat Interpreting Regression Effects

Zelig Everyone's Statistical Software

zic Bayesian Inference for Zero-Inflated Count Models

zipcode U.S. ZIP Code database

zipfR Statistical models for word frequency distributions

zoeppritz Zoeppritz Equations

zoo S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)

zyp Zhang + Yue-Pilon trends package

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