相關文章:引入套件
套件列表
套件 |
用途 |
boot |
bootstraping 方法與抽樣 |
class |
分類方法 |
cluster |
分群(聚類)方法 |
foreign |
讀取外部格式 (S3, Stata, SAS, Minitab, SPSS) … |
KernSmooth |
核密度擬合方法 |
lattice |
Grid 新一代圖形套件 |
MASS Venables & Ripley |
Venables&Ripley 的 Modern Applied Statistics with S 書籍之範例程式與函式庫 |
mgcv |
廣義的可加模型 |
nlme |
線性與非線性回合效應模型 |
nnet |
類神經網路和多項對數線性模型 |
rpart |
遞迴分割方法 |
spatial |
空間分析 (Kriging) |
survival |
生存分析 |
關注套件
- jit Just-in-time compiler for the R language
- languageR Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
- penalizedSVM Feature Selection SVM using penalty functions
- rminer Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
- SVMMaj SVMMaj algorithm
svDialogs SciViews GUI API - Dialog boxes
svGUI SciViews GUI API - Functions to manage GUI client
svIDE SciViews GUI API - IDE and code editor functions
svMisc SciViews GUI API - Miscellaneous functions
svSocket SciViews GUI API - R Socket Server
svSweave SciViews GUI API - Sweave functions
svTools SciViews GUI API - Tools (wrapper for packages tools and codetools)
svUnit SciViews GUI API - Unit testing
svWidgets SciViews GUI API - Widgets & Windows
svmpath svmpath: the SVM Path algorithm
wSVM Weighted SVM with boosting algorithm for improving accuracy
ade4TkGUI ade4 Tcl/Tk Graphical User Interface
BiplotGUI Interactive Biplots in R
biOpsGUI GUI for Basic image operations
CommonJavaJars Useful libraries for building a Java based GUI under R
caGUI A Tcl/Tk GUI for the functions in the ca package
detrendeR Start the detrendeR Graphical User Interface (GUI)
fgui Function GUI
GrapheR A multiplatform GUI for drawing customizable graphs in R
TGUICore Teaching GUI - Core functionality
TGUITeaching Teaching GUI - prototype
TinnR Resources of Tinn-R GUI/Editor for R Environment
traitr An interface for creating GUIs modeled in part after traits UI module for python
gooJSON Google JSON Data Interpreter for R
googleVis Interface between R and the Google Visualisation API
googlebigquery R client library for communicating with the Google Bigquery service
DBI R Database Interface
dbConnect Provides a graphical user interface to connect with databases that use MySQL
filehash Simple key-value database
filehashSQLite Simple key-value database using SQLite
RMySQL R interface to the MySQL database
RODBC ODBC Database Access
ROracle Oracle database interface for R
ROracleUI Convenient Tools for Working with Oracle Databases
RPostgreSQL R interface to the PostgreSQL database system
RpgSQL DBI/RJDBC interface to PostgreSQL Database
sas7bdat SAS Database Reader (experimental)
hapassoc Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
lemma Laplace approximated EM Microarray Analysis
cplm Monte Carlo EM algorithms and Bayesian methods for fitting Tweedie compound Poisson linear models
更多 R 套件
- http://cran.r-project.org/web/packages/available_packages_by_name.html (3258 筆)
ACCLMA ACC & LMA Graph Plotting
ADGofTest Anderson-Darling GoF test
ADM3 An Interpretation of the ADM method - automated detection algorithm
ADaCGH Analysis of data from aCGH experiments
AER Applied Econometrics with R
AGSDest Estimation in adaptive group sequential trials
AICcmodavg Model selection and multimodel inference based on (Q)AIC(c)
AIGIS Areal Interpolation for GIS data
AIM AIM: adaptive index model
ALS multivariate curve resolution alternating least squares (MCR-ALS)
AMA Anderson-Moore Algorithm
AMORE A MORE flexible neural network package
APSIMBatch Analysis the output of Apsim software
AUCRF Variable Selection with Random Forest and the Area Under the Curve
AcceptanceSampling Creation and evaluation of Acceptance Sampling Plans
AdMit Adaptive Mixture of Student-t distributions
AdaptFit Adaptive Semiparametic Regression
Agreement Statistical Tools for Measuring Agreement
AlgDesign Algorithmic Experimental Design
AllPossibleSpellings Computes all of a word's possible spellings
Amelia Amelia II: A Program for Missing Data
AnalyzeFMRI Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format
Animal Analyze time-coded animal behavior data
AnnotLists Data extraction tool from annotations files
AquaEnv AquaEnv - an integrated development toolbox for aquatic chemical model generation
ArDec Time series autoregressive-based decomposition
aCGH.Spline Robust spline interpolation for dual color array comparative genomic hybridisation data
abc Tools for Approximate Bayesian Computation (ABC)
abd The Analysis of Biological Data
abind Combine multi-dimensional arrays
abn Multidimensional Bayesian Regression
accuracy Tools for testing and improving accuracy of statistical results
acepack ace() and avas() for selecting regression transformations
actuar Actuarial functions
ada ada: an R package for stochastic boosting
adabag Applies Adaboost.M1 and Bagging
adaptTest Adaptive two-stage tests
adaptivetau Tau-leaping stochastic simulation
ade4 Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
ade4TkGUI ade4 Tcl/Tk Graphical User Interface
adegenet adegenet: an R package for the exploratory analysis of genetic and genomic data
adehabitat Analysis of habitat selection by animals
adehabitatHR Home range Estimation
adehabitatHS Analysis of habitat selection by animals
adehabitatLT Analysis of animal movements
adehabitatMA Tools to Deal with Raster Maps
adephylo adephylo: exploratory analyses for the phylogenetic comparative method
adimpro Adaptive Smoothing of Digital Images
adk Anderson-Darling K-Sample Test and Combinations of Such Tests
adlift An adaptive lifting scheme algorithm
ads Spatial point patterns analysis
afc Calculate afc
afmtools Estimation, Diagnostic and Forecasting Functions for ARFIMA models
agilp Extracting and preprocessing Agilent express arrays
agricolae Statistical Procedures for Agricultural Research
agridat Agricultural datasets
agsemisc Miscellaneous plotting and utility functions
ahaz Regularization for semiparametric additive hazards regression
akima Interpolation of irregularly spaced data
alabama Constrained nonlinear optimization
allan Automated Large Linear Analysis Node
allanvar Allan Variance Analysis
allelic A fast, unbiased and exact allelic exact test
alphahull Generalization of the convex hull of a sample of points in the plane
alr3 Data to accompany Applied Linear Regression 3rd edition
amap Another Multidimensional Analysis Package
amba Additive Models for Business Applications
amei Adaptive Management of Epidemiological Interventions
amer Additive mixed models with lme4
anacor Simple and Canonical Correspondence Analysis
anaglyph 3D Anaglyph Plots
analogue Analogue and weighted averaging methods for palaeoecology
anapuce Tools for microarray data analysis
anchors Statistical analysis of surveys with anchoring vignettes
andrews Andrews curves
anesrake ANES Raking Implementation
animation A Gallery of Animations in Statistics and Utilities to Create Animations
anm Analog model for downscaling
ant Version of ant specific to R
aod Analysis of Overdispersed Data
apTreeshape Analyses of Phylogenetic Treeshape
apcluster Affinity Propagation Clustering
ape Analyses of Phylogenetics and Evolution
aplpack Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions
approximator Bayesian prediction of complex computer codes
apsrtable apsrtable model-output formatter for social science
apt Asymmetric Price Transmission (apt)
aqfig Functions to help display air quality model output and monitoring data
aqp Algorithms for Quantitative Pedology
aratio Assessment ratio analysis
archetypes Archetypal Analysis
ares Environment air pollution epidemiology: a library for time series analysis
arf3DS4 Activated Region Fitting, fMRI data analysis (3D)
argosfilter Argos locations filter
arm Data Analysis Using Regression and Multilevel/Hierarchical Models
aroma.affymetrix Analysis of large Affymetrix microarray data sets
aroma.apd A probe-level data file format used by aroma.affymetrix [DEPRECATED]
aroma.cn Copy-number analysis of large microarray data sets
aroma.core Core methods and classes used by aroma.* package part of The Aroma Project
aroma.light Light-weight methods for normalization and visualization of microarray data using only basic R data types
arrayImpute Missing imputation for microarray data
arrayMissPattern Exploratory analysis of Missing patterns for microarray data
arrayhelpers Convenience functions for arrays
ars Adaptive Rejection Sampling
arules Mining Association Rules and Frequent Itemsets
arulesNBMiner Mining NB-Frequent Itemsets and NB-Precise Rules
arulesSequences Mining frequent sequences
arulesViz arulesViz - Visualizing Association Rules and Frequent Itemsets
asbio A collection of statistical tools for biologists
ascii Export R objects to several markup languages
asd Simulations for adaptive seamless designs
ash David Scott's ASH routines
aspace A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
aspect Aspects of Multivariables
assist A Suite of S-Plus Functions Implementing Smoothing Splines
aster Aster Models
aster2 Aster Models
asympTest Asymptotic statistic
asypow Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
atmi Analysis of technical market indicators
audio Audio Interface for R
audit Bounds for Accounting Populations
auteur Bayesian sampler of the trait-evolutionary process
automap Automatic interpolation package
aws Adaptive Weights Smoothing
aylmer A generalization of Fisher's exact test
B2Z Bayesian Two-Zone Model
BACCO Bayesian Analysis of Computer Code Output (BACCO)
BAMD Bayesian Association Model for Genomic Data with Missing Covariates
BARD Better Automated ReDistricting
BAS Bayesian Model Averaging using Bayesian Adaptive Sampling
BAYSTAR On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
BB Solving and Optimizing Large-Scale Nonlinear Systems
BBMM Brownian bridge movement model for estimating the movement path of an animal using discrete location data
BCA Business and Customer Analytics
BCBCSF Bias-corrected Bayesian Classification with Selected Features
BCE Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BGSIMD Block Gibbs Sampler with Incomplete Multinomial Distribution
BHH2 Useful Functions for Box, Hunter and Hunter II
BLCOP Black-Litterman and copula-opinion pooling frameworks
BLR Bayesian Linear Regression
BMA Bayesian Model Averaging
BMN The pseudo-likelihood method for pairwise binary markov networks
BMS Bayesian Model Averaging Library
BPHO Bayesian Prediction with High-order Interactions
BSDA Basic Statistics and Data Analysis
BSagri Statistical methods for safety assessment in agricultural field trials
BTSPAS Bayesian Time-Strat. Population Analysis
BaBooN Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data
BaM Functions and datasets for books by Jeff Gill
Barnard Barnard's Unconditional Test
BayHap Bayesian analysis of haplotype association using Markov Chain Monte Carlo
BayHaz R Functions for Bayesian Hazard Rate Estimation
BayesDA Functions and Datasets for the book "Bayesian Data Analysis"
BayesQTLBIC Bayesian multi-locus QTL analysis based on the BIC criterion
BayesTree Bayesian Methods for Tree Based Models
BayesValidate BayesValidate Package
BayesX R Utilities Accompanying the Software Package BayesX
Bchron Bayesian chronologies via compound Poisson-Gamma processes
Benchmarking Benchmark and frontier analysis using DEA and SFA
Bergm Bayesian inference for exponential random graph models
Bessel Bessel – Bessel Functions Computations and Approximations
Bhat General likelihood exploration
BiGGR Creates an interface to BiGG database, provides a framework for simulation and produces flux graphs
BiasedUrn Biased Urn model distributions
BioIDMapper Mapping between BioIDs
BioMark Find biomarkers in two-class discrimination problems
BioPhysConnectoR BioPhysConnectoR
BioStatR Initiation à la Statistique avec R
Biodem Biodemography functions
BiodiversityR GUI for biodiversity and community ecology analysis
Biograph Explore life histories
BiomarkeR Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a method to infer networks
BiplotGUI Interactive Biplots in R
BlakerCI Blaker's binomial confidence limits
Bmix Bayesian Sampling for Stick-breaking Mixtures
BoSSA a Bunch of Structure and Sequence Analysis
Bolstad Bolstad functions
Bolstad2 Bolstad functions
BoolNet Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
BootPR Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Boruta Boruta – a tool for finding significant attributes in information systems
BradleyTerry Bradley-Terry Models – this package is now deprecated in favour of 'BradleyTerry2'
BradleyTerry2 Bradley-Terry models
Brobdingnag Very large numbers in R
BsMD Bayes Screening and Model Discrimination
backfitRichards Backfitted independent values of Richards curves
backtest Exploring portfolio-based conjectures about financial instruments
bamdit Bayesian Meta-Analysis of diagnostic test data
barcode Barcode distribution plots
bark Bayesian Additive Regresssion Kernels
base64 Base 64 encoder/decoder
baseline Baseline Correction of Spectra
basicspace A Package to Recover a Basic Space from Issue Scales
batade HTML reports and so on
batch Batching Routines in Parallel and Passing Command-Line Arguments to R
bayesDem Graphical User Interface for bayesTFR and bayesLife
bayesGARCH Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesLife Bayesian Projection of Life Expectancy
bayesQR Bayesian quantile regression
bayesSurv Bayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFR Bayesian Fertility Projection
bayesclust Tests/Searches for significant clusters in genetic data
bayescount Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC
bayesm Bayesian Inference for Marketing/Micro-econometrics
bayesmix Bayesian Mixture Models with JAGS
bayespack Numerical Integration for Bayesian Inference
bayespref Hierarchical Bayesian analysis of ecological count data
bbemkr Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
bbmle Tools for general maximum likelihood estimation
bclust Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data
bcool Bringing to light significant Columns correlated with Organism Labels
bcp A Package for Performing a Bayesian Analysis of Change Point Problems
bcv Cross-Validation for the SVD (Bi-Cross-Validation)
bdpv Inference and design for predictive values in binary diagnostic tests
bdsmatrix Routines for Block Diagonal Symmetric matrices
beadarrayMSV Analysis of Illumina BeadArray SNP data including MSV markers
beanplot Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
bear Average bioequivalence and bioavailability data analysis tool
beeswarm The bee swarm plot, an alternative to stripchart
belief Contains basic functions to manipulate belief functions and associated mass assignments
benchden 28 benchmark densities from Berlinet/Devroye (1994)
benchmark Benchmark Experiments Toolbox
bentcableAR Bent-Cable Regression for Independent Data or Autoregressive Time Series
ber Batch Effects Removal
bestglm Best Subset GLM
betaper Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
betareg Beta Regression
bethel Bethel's algorithm
bfast BFAST: Breaks For Additive Seasonal and Trend
bfp Bayesian Fractional Polynomials
bgmm Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling
biGraph Analysis Toolbox For Bipartite Graphs
biOps Image processing and analysis
biOpsGUI GUI for Basic image operations
bibtex bibtex parser
biclust BiCluster Algorithms
bifactorial Inferences for bi- and trifactorial trial designs
biganalytics A library of utilities for big.matrix objects of package bigmemory
biglars Scalable Least-Angle Regression and Lasso
biglm bounded memory linear and generalized linear models
bigmemory Manage massive matrices with shared memory and memory-mapped files
bigtabulate table-, tapply-, and split-like functionality for matrix and big.matrix objects
bild bild: a package for BInary Longitudinal Data
bimetallic Power for SNP analyses using silver standard cases
binGroup Evaluation and experimental design for binomial group testing
binMto Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
binarySimCLF Simulates Correlated Binary Data
bindata Generation of Artificial Binary Data
binhf Haar-Fisz functions for binomial data
binom Binomial Confidence Intervals For Several Parameterizations
binomSamSize Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
binomTools Performing diagnostics on binomial regression models
bio.infer Predict environmental conditions from biological observations
biopara Self-contained parallel system for R
bios2mds From BIOlogical Sequences to MultiDimensional Scaling
bipartite Visualising bipartite networks and calculating some (ecological) indices
bise Auxiliary functions for phenological data analysis
biseVec Auxiliary functions for phenological data analysis
bisoreg Bayesian Isotonic Regression with Bernstein Polynomials
bit A class for vectors of 1-bit booleans
bitops Functions for Bitwise operations
bivarRIpower Sample size calculations for bivariate longitudinal data
biwt Functions to compute the biweight mean vector and covariance & correlation matrices
blender Analyze biotic homogenization of landscapes
blighty United Kingdom coastlines
blm Binomial linear and linear-expit regression
blme Bayesian Linear Mixed-Effects models
blockTools Block, assign, and diagnose potential interference in randomized experiments
blockmodeling An R package for Generalized and classical blockmodeling of valued networks
blockrand Randomization for block random clinical trials
bmd Benchmark dose analysis for dose-response data
bmem Mediation analysis with missing data using bootstrap
bnlearn Bayesian network structure learning, parameter learning and inference
boa Bayesian Output Analysis Program (BOA) for MCMC
boolean Boolean Binary Response Models
boolfun Cryptographic Boolean Functions
boot Bootstrap Functions (originally by Angelo Canty for S)
bootRes Bootstrapped Response and Correlation Functions
bootStepAIC Bootstrap stepAIC
bootruin A bootstrap test for the probability of ruin in the classical risk process
bootspecdens Testing equality of spectral densities
bootstrap Functions for the Book "An Introduction to the Bootstrap"
bpca Biplot of Multivariate Data Based on Principal Components Analysis
bqtl Bayesian QTL mapping toolkit
brainwaver Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory
brew Templating Framework for Report Generation
brglm Bias reduction in binomial-response GLMs
bs Package for the Birnbaum-Saunders distribution
bsml Basis Selection from Multiple Libraries
bspec Bayesian spectral inference
bst Gradient Boosting
bujar Buckley-James Regression for Survival Data with High-Dimensional Covariates
bvls The Stark-Parker algorithm for bounded-variable least squares
bvpSolve Solvers for boundary value problems of ordinary differential equations
CADFtest This package performs the CADF unit root test proposed in Hansen (1995)
CADStat Provides a GUI to several statistical methods useful for causal assessment
CAVIAR Cambial Activity and wood formation data processing, visualisation and analysis using R
CCA Canonical correlation analysis
CCM Correlation classification method (CCM)
CCMtools Clustering through "Correlation Clustering Model" (CCM) and cluster analysis tools
CDFt Statistical downscaling through CDF-transform
CDNmoney Components of Canadian Monetary and Credit Aggregates
CDVine Statistical inference of C- and D-vine copulas
CFL Compensatory Fuzzy Logic
CGIwithR CGI Programming in R
CGene Causal Genetic Analysis
CHCN Canadian Historical Climate Network
CHNOSZ Chemical Thermodynamics and Activity Diagrams
CHsharp Choi and Hall Clustering in 3d
CITAN CITation ANalysis toolpack
CLSOCP A smoothing Newton method SOCP solver
CMC Cronbach-Mesbah Curve
CNVassoc Association analysis of CNV data
COMPoissonReg Conway-Maxwell Poisson (COM-Poisson) Regression
COP Variables selection for index models via correlation pursuit
CORElearn CORElearn - classification, regression, feature evaluation and ordinal evaluation
CORREP Multivariate Correlation Estimator and Statistical Inference Procedures
COSINE COndition SpecIfic sub-NEtwork
COUNT Functions, data and code for count data
COZIGAM Constrained and Unconstrained Zero-Inflated Generalized Additive Models with Model Selection Criterion
CPE Concordance Probability Estimates in Survival Analysis
CRTSize Sample Size Estimation Functions for Cluster Randomized Trials
CTT Classical Test Theory Functions
CVThresh Level-Dependent Cross-Validation Thresholding
Cairo R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
CalciOMatic Automatic Calcium Imaging Analysis
CarbonEL Carbon Event Loop
CatDyn Fishery Stock Assessment by Catch Dynamic Models
CausalGAM Estimation of Causal Effects with Generalized Additive Models
CellularAutomaton One-Dimensional Cellular Automata
ChainLadder Mack, Bootstrap, Munich, Multivariate-chain-ladder, Clark methods and generalized linear models for insurance claims reserving
ChemoSpec Exploratory Chemometrics for Spectroscopy
ChemometricsWithR Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
ChemometricsWithRData Data for package ChemometricsWithR
CircNNTSR CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models
CircStats Circular Statistics, from "Topics in circular Statistics" (2001)
CityPlot Visualization of structure and contents of a database
Ckmeans.1d.dp Optimal distance-based clustering for one-dimensional data
ClinicalRobustPriors Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners
ClustOfVar Clustering of variables
CoCo Graphical modelling by log-linear models (an interface from R to CoCo)
CoCoCg Graphical modelling by CG regressions
CoCoGraph Interactive and dynamic graphs for the CoCo objects
CollocInfer Collocation Inference for Dynamic Systems
CombMSC Combined Model Selection Criteria
CommonJavaJars Useful libraries for building a Java based GUI under R
CompQuadForm Distribution function of quadratic forms in normal variables
CompRandFld Composite-likelihood based Analysis of Random Fields
CompareTests Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens
CompetingRiskFrailty Competing Risk Model with Frailties for Right Censored Survival Data
ConvCalendar Converts dates between calendars
ConvergenceConcepts Seeing convergence concepts in action
CorrBin Nonparametrics with clustered binary data
Covpath COVPATH Package
CoxBoost Cox models by likelihood based boosting for a single survival endpoint or competing risks
Cprob Conditional probability function of a competing event
CreditMetrics Functions for calculating the CreditMetrics risk model
Cubist Rule- and Instance-Based Regression Modeling
CvM2SL1Test L1-version of Cramer-von Mises Two Sample Tests
CvM2SL2Test Cramer-von Mises Two Sample Tests
c3net Infering large-scale gene networks with C3NET
cMonkey cMonkey intgrated biclustering algorithm
ca Simple, Multiple and Joint Correspondence Analysis
caGUI A Tcl/Tk GUI for the functions in the ca package
caMassClass Processing & Classification of Protein Mass Spectra (SELDI) Data
caTools Tools: moving window statistics, GIF, Base64, ROC AUC, etc
cacheSweave Tools for caching Sweave computations
cacher Tools for caching and distributing statistical analyses
cairoDevice Cairo-based cross-platform antialiased graphics device driver
calib Statistical tool for calibration of plate based bioassays
calibrate Calibration of Scatterplot and Biplot Axes
calibrator Bayesian calibration of complex computer codes
candisc Generalized Canonical Discriminant Analysis
canvas R graphics device targeting the HTML canvas element
caper Comparative Analyses of Phylogenetics and Evolution in R
car Companion to Applied Regression
care High-Dimensional Regression and CAR Score Variable Selection
caret Classification and Regression Training
caroline A Collection of General Purpose Functions for R
caschrono Séries temporelles avec R - Méthodes et cas
caspar Clustered and sparse regression (CaSpaR)
cat Analysis of categorical-variable datasets with missing values
catR Procedures to generate IRT adaptive tests (CAT)
catmap Case-control And Tdt Meta-Analysis Package
catnet Categorical Bayesian Network Inference
catspec Special models for categorical variables
cba Clustering for Business Analytics
cccd Class Cover Catch Digraphs
ccems Combinatorially Complex Equilibrium Model Selection
ccgarch Conditional Correlation GARCH models
cclust Convex Clustering Methods and Clustering Indexes
cda Coupled dipole approximation
cellVolumeDist Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
cem CEM: Software for Coarsened Exact Matching
cems Conditional expectatation manifolds
censReg Censored Regression (Tobit) Models
cfa Analysis of configuration frequencies (CFA)
cg Comparison of groups
cgdsr R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
cggd Continuous Generalized Gradient Descent
cgh Microarray CGH analysis using the Smith-Waterman algorithm
cghFLasso Detecting hot spot on CGH array data with fused lasso regression
cghseg Segmentation methods for array CGH analysis
changeLOS Change in LOS
changepoint An R package for changepoint analysis
charlson Converts listwise icd9 data into comorbidity count and Charlson Index
cheb Discrete Linear Chebyshev Approximation
chemCal Calibration functions for analytical chemistry
chemometrics Multivariate Statistical Analysis in Chemometrics
cherry Multiple testing methods for exploratory research
choplump Choplump tests
chplot Augmented Convex Hull Plots
chron Chronological objects which can handle dates and times
cimis R package for retrieving data from CIMIS
circular Circular Statistics
citbcmst Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data
clValid Validation of Clustering Results
clac Clust Along Chromosomes, a method to call gains/losses in CGH array data
class Functions for Classification
classGraph Construct Graphs of S4 Class Hierarchies
classInt Choose univariate class intervals
classifly Explore classification models in high dimensions
clim.pact Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data
climatol Some Tools for Climatology: series homogenization, plus windrose and Walter&Lieth diagrams
clime Constrained L1-minimization for Inverse (covariance) Matrix Estimation
clinfun Clinical Trial Design and Data Analysis Functions
clinsig Clinical significance functions
clpAPI R Interface to C API of COIN-OR Clp
clue Cluster ensembles
clues Clustering Method Based on Local Shrinking
clustTool GUI for clustering data with spatial information
cluster Cluster Analysis Extended Rousseeuw et al
clusterCons Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter
clusterGeneration random cluster generation (with specified degree of separation)
clusterPower Power calculations for cluster-randomized crossover trials
clusterRepro Reproducibility of gene expression clusters
clusterSim Searching for optimal clustering procedure for a data set
clusterfly Explore clustering interactively using R and GGobi
clustsig Significant Cluster Analysis
clustvarsel Variable Selection for Model-Based Clustering
clv Cluster Validation Techniques
cmaes Covariance Matrix Adapting Evolutionary Strategy
cmm Categorical Marginal Models
cmprsk Subdistribution Analysis of Competing Risks
cmprskContin Continuous mark-specific relative risks for two groups
cmrutils Misc Functions of the Center for the Mathematical Research
cncaGUI Canonical Non-symmetrical Correspondence Analysis in R
coarseDataTools A collection of functions to help with analysis of coarse infectious disease data
cobs COBS – Constrained B-splines (Sparse matrix based)
cobs99 Constrained B-splines – outdated 1999 version
cocorresp Co-correspondence analysis methods
coda Output analysis and diagnostics for MCMC
codep Multiscale Codependence Analysis
codetools Code Analysis Tools for R
coenoflex Gradient-Based Coenospace Vegetation Simulator
coin Conditional Inference Procedures in a Permutation Test Framework
colbycol Read big text files column by column, sometimes much bigger than available RAM, into R
colcor Tests for column correlation in the presence of row correlation
colorRamps Builds color tables
colorspace Color Space Manipulation
combinat combinatorics utilities
compHclust Complementary Hierarchical Clustering
compOverlapCorr Comparing overlapping correlation coefficients
compare Comparing Objects for Differences
compareGroups descriptives by groups
compeir Event-specific incidence rates for competing risks data
compoisson Conway-Maxwell-Poisson Distribution
compositions Compositional Data Analysis
compute.es Compute Effect Sizes
concor Concordance
concord Concordance and reliability
concreg Concordance regression
cond Approximate conditional inference for logistic and loglinear models
condGEE Parameter estimation in conditional GEE for recurrent event gap times
conf.design Construction of factorial designs
confReg Confidence Estimators for Individual Regression Predictions
constrainedKriging Constrained, covariance-matching constrained and universal point or block kriging
contfrac Continued fractions
contrast A collection of contrast methods
convexHaz Nonparametric MLE/LSE of convex hazard
copBasic Basic Copula Functions
copas Statistical methods to model and adjust for bias in meta-analysis
copula Multivariate dependence with copulas
copulaedas Estimation of Distribution Algorithms Based on Copula Theory
corcounts Generate correlated count random variables
corpcor Efficient Estimation of Covariance and (Partial) Correlation
corpora Statistics for corpus linguists
corrgram Plot a correlogram
corrperm Permutation Tests of Correlation with Repeated Measurements
corrplot visualization of a correlation matrix
corrsieve CorrSieve
cosso COSSO, adaptive COSSO, variable selection for nonparametric smoothing spline models
costat Time series costationarity determination and tests of stationarity
countrycode Create and manipulate data frames that contain country names or country coding schemes
covRobust Robust Covariance Estimation via Nearest Neighbor Cleaning
coxme Mixed Effects Cox Models
coxphf Cox regression with Firth's penalized likelihood
coxphw Weighted Cox regression
coxrobust Robust Estimation in Cox Model
cplexAPI R Interface to C API of IBM ILOG CPLEX
cplm Monte Carlo EM algorithms and Bayesian methods for fitting Tweedie compound Poisson linear models
cramer Multivariate nonparametric Cramer-Test for the two-sample-problem
crank Completing ranks
crantastic Various R tools for http://crantastic.org/
crawl Fit continuous-time correlated random walk models for animal movement data
crimCV Group-Based Modelling of Longitudinal Data
crmn CCMN and other noRMalizatioN methods for metabolomics data
crossdes Design and Randomization in Crossover Studies
crosshybDetector Detection of cross-hybridization events in microarray experiments
crossmatch The cross-match test
crrSC Competing risks regression for Stratified and Clustered data
crs Categorical Regression Splines
cshapes CShapes Dataset and Utilities
cslogistic Conditionally Specified Logistic Regression
ctarma Estimation and simulation if carma(p,q)
cthresh Complex Wavelet Denoising software
cts Continuous Time Autoregressive Models
ctv CRAN Task Views
cubature Adaptive multivariate integration over hypercubes
cudaBayesreg CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
cudaBayesregData Data sets for the examples used in the package "cudaBayesreg"
cumSeg Change point detection in genomic sequences
curvHDR curvHDR filtering
curvetest Test the equality of two curves, or one curve with 0
cusp Cusp Catastrophe Model Fitting Using Maximum Likelihood
cwhmisc CWH's functions for maths, plotting, printing, statistics, strings, and tools
cyclones Cyclone identification
DAAG Data Analysis And Graphics data and functions
DAAGbio Data Sets and Functions, for demonstrations with expression arrays and gene sequences
DAAGxtras Data Sets and Functions, supplementary to DAAG
DAGGER Consensus genetic maps
DAKS Data Analysis and Knowledge Spaces
DALY DALY Calculator - A GUI for stochastic DALY calculation in R
DAMisc Dave Armstrong's Miscellaneous Functions
DART Denoising Algorithm based on Relevance network Topology
DATforDCEMRI Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
DBGSA methods of distance-based gene set functional enrichment analysis
DBI R Database Interface
DCGL Differential Coexpression Analysis of Gene Expression Microarray Data
DCluster Functions for the detection of spatial clusters of diseases
DDHFm Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
DECIDE DEComposition of Indirect and Direct Effects
DEMEtics Evaluating the genetic differentiation between populations based on Gst and D values
DEoptim Global optimization by differential evolution
DIME DIME (Differential Identification using Mixture Ensemble)
DMwR Functions and data for "Data Mining with R"
DNAtools Tools for analysing forensic genetic DNA data
DOBAD Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains
DOSim Disease Analysis toolkit for gene set; Computation of similarities between DO terms and disease similarity between gene products; Module detection among the gene set and multilayer annotation for each module
DPpackage Bayesian Nonparametric and Semiparametric Analysis
DRI DR-Integrator
DSpat Spatial modelling for distance sampling data
DTDA Doubly truncated data analysis
DTK Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
Daim Diagnostic accuracy of classification models
DatABEL file-based access to large matrices stored on HDD in binary format
Davies The Davies quantile function
Deducer Deducer
DeducerExtras Additional dialogs and functions for Deducer
DeducerMMR A Deducer plugin for moderated multiple regressions and simple slopes analysis
DeducerPlugInExample Deducer Plug-in Example
DeducerPlugInScaling Reliability and factor analysis plugin
Defaults Create Global Function Defaults
Depela Depela
DescribeDisplay R interface to DescribeDisplay (GGobi plugin)
Design Design Package
DesignPatterns Design Patterns in R to build reusable object-oriented software
Devore5 Data sets from Devore's "Prob and Stat for Eng (5th ed)"
Devore6 Data sets from Devore's "Prob and Stat for Eng (6th ed)"
Devore7 Data sets from Devore's "Prob and Stat for Eng (7th ed)"
DiagTest3Grp Diagnostic test summary measures for three ordinal groups
DiagnosisMed Diagnostic test accuracy evaluation for medical professionals
DiceDesign Designs of Computer Experiments
DiceEval Construction and evaluation of metamodels
DiceKriging Kriging methods for computer experiments
DiceOptim Kriging-based optimization for computer experiments
DiceView Plot methods for computer experiments design and surrogate
DierckxSpline R companion to "Curve and Surface Fitting with Splines"
DistributionUtils Distribution Utilities
DiversitySampler Functions for re-sampling a community matrix to compute diversity indices at different sampling levels
DoE.base Full factorials, orthogonal arrays and base utilities for DoE packages
DoE.wrapper Wrapper package for design of experiments functionality
DoseFinding Planning and Analyzing Dose Finding experiments
dae Functions useful in the design and ANOVA of experiments
dafs Data analysis for forensic scientists
dagR R functions for directed acyclic graphs
darts Statistical Tools to Analyze Your Darts Game
data.table Extension of data.frame for fast indexing, fast ordered joins and fast grouping
dataframes2xls dataframes2xls writes data frames to xls files
datamap A system for mapping foreign objects to R variables and environments
dataview Human readable data presentation
date Functions for handling dates
dbConnect Provides a graphical user interface to connect with databases that use MySQL
dbEmpLikeGOF Goodness-of-fit and two sample comparison tests using sample entropy
dblcens Compute the NPMLE of distribution from doubly censored data
dbstats Distance-based statistics (dbstats)
dcemriS4 A Package for Medical Image Analysis (S4 implementation)
dcens Doubly censoring estimation
dclone Data Cloning and MCMC Tools for Maximum Likelihood Methods
dcv Conventional Cross-validation statistics for climate-growth model
ddepn Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data
ddesolve Solver for Delay Differential Equations
ddst Data driven smooth test
deSolve General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE), differential algebraic equations (DAE), and delay differential equations (DDE)
deal Learning Bayesian Networks with Mixed Variables
debug MVB's debugger for R
decon Deconvolution Estimation in Measurement Error Models
deducorrect Deductive correction of simple rounding, typing and sign errors
degenes Detection of differentially expressed genes
degreenet Models for Skewed Count Distributions Relevant to Networks
deldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
delftfews delftfews R extensions
delt Estimation of multivariate densities with adaptive histograms
demography Forecasting mortality, fertility, migration and population data
denpro Visualization of multivariate, functions, sets, and data
denstrip Density strips and other methods for compactly illustrating distributions
depmix Dependent Mixture Models
depmixS4 Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depth Depth functions tools for multivariate analysis
depthTools Depth Tools Package
descr Descriptive statistics
desirability Desirabiliy Function Optimization and Ranking
desire Desirability functions
detrendeR Start the detrendeR Graphical User Interface (GUI)
devEMF EMF graphics output device
devtools Tools to make developing R code easier
dfcrm Dose-finding by the continual reassessment method
dfoptim Derivative-free Optimization
dglm Double generalized linear models
dgof Discrete Goodness-of-Fit Tests
diagram Functions for visualising simple graphs (networks), plotting flow diagrams
diamonds Analysis and sampling grids from diamond partitions
dice Calculate probabilities of various dice-rolling events
dichromat Color schemes for dichromats
dicionariosIBGE Dictionaries for reading survey microdata from IBGE
dielectric Defines some physical constants and dielectric functions commonly used in optics, plasmonics
difR Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics
diff Statistics: What's the Difference?
diffractometry Baseline identification and peak decomposition for x-ray diffractograms
diffusionMap Diffusion map
digeR GUI tool for analyzing 2D DIGE data
digest Create cryptographic hash digests of R objects
digitize digitize : a plot digitizer in R
diptest Hartigan's dip test statistic for unimodality - corrected code
directlabels Direct labels for multicolor plots in lattice or ggplot2
dirmult Estimation in Dirichlet-Multinomial distribution
discretization Data preprocessing, discretization for classification
diseasemapping Calculate observed and expected disease incidence counts from a case file and population data
dismo Species distribution modeling
dispmod Dispersion models
distory Distance Between Phylogenetic Histories
distr Object oriented implementation of distributions
distrDoc Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
distrEllipse S4 classes for elliptically contoured distributions
distrEx Extensions of package distr
distrMod Object oriented implementation of probability models
distrSim Simulation classes based on package distr
distrTEst Estimation and Testing classes based on package distr
distrTeach Extensions of package distr for teaching Stochastics/Statistics in secondary school
divagis Provides tools for quality checks of georeferenced plant species accessions
diveMove Dive analysis and calibration
diversitree diversitree: comparative phylogenetic tests of diversification
divisors Find the divisors of a number
dixon Nearest Neighbour Contingency Table Analysis
dlm Bayesian and Likelihood Analysis of Dynamic Linear Models
dlmap Detection Localization Mapping for QTL
dlmodeler Generalized Dynamic Linear Modeler
dlnm Distributed Lag Non-linear Models
dmt Dependency Modeling Toolkit
doBy Groupwise summary statistics, general linear contrasts, LSMEANS (least-squares-means), and other utilities
doMC Foreach parallel adaptor for the multicore package
doMPI Foreach parallel adaptor for the Rmpi package
doRedis Foreach parallel adapter for the rredis package
doSMP Foreach parallel adaptor for the revoIPC package
doSNOW Foreach parallel adaptor for the snow package
dpa Dynamic Path Approach
dplR Dendrochronology Program Library in R
dpmixsim Dirichlet Process Mixture model simulation for clustering and image segmentation
dr Methods for dimension reduction for regression
drawExpression Visualising R syntax through graphics
drc Analysis of dose-response curves
drfit Dose-response data evaluation
drm Regression and association models for repeated categorical data
dse Dynamic Systems Estimation (time series package)
dse1 DSE (unbundled transition package)
dse2 DSE (unbundled transition package)
dti Analysis of diffusion weighted imaging (DWI) data
dtt Discrete Trigonometric Transforms
dtw Dynamic Time Warping algorithms
dummies Create dummy/indicator variables flexibly and efficiently
dvfBm Discrete variations of a fractional Brownian motion
dyad Analysis of dyadic observational data
dyn Time Series Regression
dynCorr Dynamic Correlation Package
dynGraph Interactive visualization of dataframes and factorial planes
dynaTree Dynamic trees for learning and design
dynamicGraph dynamicGraph
dynamicTreeCut Methods for detection of clusters in hierarchical clustering dendrograms
dynamo Dynamic Models
dynlm Dynamic Linear Regression
EDR Estimation of the effective dimension reduction (EDR) space
EMA Easy Microarray data Analysis
EMD Empirical Mode Decomposition and Hilbert Spectral Analysis
EMJumpDiffusion EM-Algorithm for Jump Diffusion processes
EMT Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
ENmisc Neuwirth miscellaenous
EQL Extended-Quasi-Likelihood-Function (EQL)
ESPRESSO Power Analysis and Sample Size Calculation
ETC Equivalence to control
EVER Estimation of Variance by Efficient Replication
EbayesThresh Empirical Bayes Thresholding and Related Methods
Ecdat Data sets for econometrics
EcoHydRology A community modeling foundation for Eco-Hydrology
ElectroGraph Enhanced routines for plotting and analyzing valued relational data
ElemStatLearn Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
EnQuireR A package dedicated to questionnaires
EngrExpt Data sets from "Introductory Statistics for Engineering Experimentation"
Epi A package for statistical analysis in epidemiology
EquiNorm Normalize expression data using equivalently expressed genes
EstCRM Calibrating Parameters for the Samejima's Continuous IRT Model
EuclideanMaps Displays Euclidean Maps
EvalEst Dynamic Systems Estimation - extensions
ExPD2D Exact Computation of Bivariate Projection Depth Based on Fortran Code
ExomeCNV Detect CNV and LOH from Exome Sequecing Data
e1071 Misc Functions of the Department of Statistics (e1071), TU Wien
eRm Extended Rasch Modeling
eVenn eVenn: A powerful tool to compare lists and draw Venn diagrams
eaf Plots of the Empirical Attainment Function
earth Multivariate Adaptive Regression Spline Models
eba Elimination-by-Aspects (EBA) Models
ebal Entropy reweighting to create balanced samples
ebdbNet Empirical Bayes Estimation of Dynamic Bayesian Networks
ecespa Functions for spatial point pattern analysis
eco R Package for Ecological Inference in 2x2 Tables
ecodist Dissimilarity-based functions for ecological analysis
ecolMod "A practical guide to ecological modelling - using R as a simulation platform"
ecoreg Ecological regression using aggregate and individual data
edci Edge Detection and Clustering in Images
editrules R package for parsing and manipulating edit rules
edrGraphicalTools Provide tools for dimension reduction methods
edtdbg Integrating R's debug() with Your Text Editor
effects Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and mixed-effects models
egarch EGARCH simulation and fitting
egonet Tool for ego-centric measures in Social Network Analysis
eha Event History Analysis
eiPack eiPack: Ecological Inference and Higher-Dimension Data Management
eigeninv Generates (dense) matrices that have a given set of eigenvalues
eigenmodel Semiparametric factor and regression models for symmetric relational data
el.convex empirical likelihood ratio tests for means
elasticnet Elastic-Net for Sparse Estimation and Sparse PCA
elec Collection of functions for statistical election audits
elec.strat Functions for election audits using stratified random samples
ellipse Functions for drawing ellipses and ellipse-like confidence regions
elliptic elliptic functions
elrm Exact Logistic Regression via MCMC
emdbook Ecological models and data (book support)
emg Exponentially Modified Gaussian (EMG) Distribution
emme2 Read and Write to an EMME/2 databank
emoa Evolutionary Multiobjective Optimization Algorithms
emplik Empirical likelihood ratio for censored/truncated data
emplik2 Empirical-likelihood test (two-sample, censored data)
emu Interface to the Emu Speech Database System
emulator Bayesian emulation of computer programs
endogMNP R Package for Fitting Multinomial Probit Models with Endogenous Selection
energy E-statistics (energy statistics)
english Translate integers into English
enrichvs Enrichment assessment of virtual screening approaches
ensembleBMA Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
entropy Entropy and Mutual Information Estimation
envelope Envelope normality test
epade Easy Plots
epiR Functions for analysing epidemiological data
epibasix Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course
epicalc Epidemiological calculator
epinet A collection of epidemic/network-related tools
epitools Epidemiology Tools
epoc EPoC (Endogenous Perturbation analysis of Cancer)
epsi Edge Preserving Smoothing for Images
eqtl Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
equate Statistical Methods for Test Score Equating
equivalence Provides tests and graphics for assessing tests of equivalence
erer Empirical Research in Economics with R
ergm Fit, Simulate and Diagnose Exponential-Family Models for Networks
ergm.userterms User-specified terms for the statnet suite of packages
esd4all esd4all
esotericR esotericR articles from lemnica.com
estout Estimates Output
etm Empirical Transition Matrix
evaluate Parsing and evaluation tools that provide more details than the default
evd Functions for extreme value distributions
evdbayes Bayesian Analysis in Extreme Value Theory
evir Extreme Values in R
exact2x2 Exact Conditional Tests and Confidence Intervals for 2x2 tables
exactLoglinTest Monte Carlo Exact Tests for Log-linear models
exactRankTests Exact Distributions for Rank and Permutation Tests
exactci Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
exactmaxsel Maximally selected statistics for binary response variables - Exact methods
exams Automatic Generation of Standardized Exams for Large-Lecture Courses
expectreg Expectile and Quantile Regression
experiment experiment: R package for designing and analyzing randomized experiments
expert Modeling without data using expert opinion
expm Matrix exponential
expsmooth Data sets from "Forecasting with exponential smoothing"
extRemes Extreme value toolkit
extfunnel Additional Funnel Plot Augmentations
extracat Graphic Extensions for Categorical Data
extremevalues Univariate outlier detection
eyetracking Eyetracking Helper Functions
ez Easy analysis and visualization of factorial experiments
FAMT Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
FAdist Distributions that are sometimes used in hydrology
FAiR Factor Analysis in R
FAmle Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
FAwR Functions and Datasets for "Forest Analytics with R"
FBN FISH Based Normalization and Copy Number inference of SNP microarray data
FD Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
FEST Identification of Family Relations using linked markers
FFD Freedom From Disease
FGN Fractional Gaussian Noise, estimation and simulaton
FITSio FITS (Flexible Image Transport System) utilities
FKF Fast Kalman Filter
FLLat Fused Lasso Latent Feature Model
FME A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis
FNN Fast Nearest Neighbor Search Algorithms and Applications
FRB Fast and Robust Bootstrap
FRBData Download financial data from FRB's website
FSelector Selecting attributes
FTICRMS Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
FactoClass Combination of Factorial Methods and Cluster Analysis
FactoMineR Multivariate Exploratory Data Analysis and Data Mining with R
Fahrmeir Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
FeaLect Scores features for Feature seLection
FieldSim Random fields simulations
FinTS Companion to Tsay (2005) Analysis of Financial Time Series
FisherEM Model-Based Clustering in the Fisher Discriminative Subspace
FitAR Subset AR Model Fitting
FitARMA FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Flury Data Sets from Flury, 1997
ForImp Imputation of missing values through a forward imputation algorithm
Formula Extended Model Formulas
FourierDescriptors Generate images using Fourier descriptors
FrF2 Fractional Factorial designs with 2-level factors
FrF2.catlg128 Complete catalogues of resolution IV 128 run 2-level fractional factorials up to 24 factors
FracSim Simulation of Lévy motions
FunCluster Functional Profiling of Microarray Expression Data
FunNet Integrative Functional Analysis of Transcriptional Networks
FuncMap Hive Plots of R Package Function Calls
fANCOVA Nonparametric Analysis of Covariance
fArma ARMA Time Series Modelling
fAsianOptions EBM and Asian Option Valuation
fAssets Rmetrics - Assets Selection and Modelling
fBasics Rmetrics - Markets and Basic Statistics
fBonds Bonds and Interest Rate Models
fCalendar Chronological and Calendarical Objects
fCertificates fCertificates - Basics of Certificates and Structured Products Valuation
fCopulae Rmetrics - Dependence Structures with Copulas
fEcofin Economic and Financial Data Sets
fExoticOptions Exotic Option Valuation
fExtremes Rmetrics - Extreme Financial Market Data
fGarch Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
fImport Rmetrics - Economic and Financial Data Import
fMultivar Multivariate Market Analysis
fNonlinear Nonlinear and Chaotic Time Series Modelling
fOptions Basics of Option Valuation
fPortfolio Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org
fRegression Regression Based Decision and Prediction
fSeries Financial Time Series Objects
fTrading Technical Trading Analysis
fUnitRoots Trends and Unit Roots
fUtilities Function Utilities
factorQR Bayesian quantile regression factor models
factualR thin wrapper for the Factual.com server API
fairselect Feature Annealed Independence Rules (demo)
fame Interface for FAME time series database
far Modelization for Functional AutoRegressive processes
faraway Functions and datasets for books by Julian Faraway
farmR Mixed Integer model of Arable Farms
fast Implementation of the Fourier Amplitute Sensitivity Test (FAST)
fastICA FastICA Algorithms to perform ICA and Projection Pursuit
fastR Data sets and utilities for Foundations and Applications of Statistics by R Pruim
fastVAR fastVAR
fastcluster Fast hierarchical clustering routines for R and Python
fastmatch Fast match() function
favir Formatted Actuarial Vignettes in R
fbati Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
fda Functional Data Analysis
fda.usc Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
fdaMixed Functional data analysis in a mixed model framework
fdim Functions for calculating fractal dimension
fdrci Permutation-based FDR Point and Confidence Interval Estimation
fdrtool Estimation and Control of (Local) False Discovery Rates
fds Functional data sets
fdth Frequency Distribution Tables, Histograms and Poligons
feature Feature significance for multivariate kernel density estimation
features Feature Extraction for Discretely-Sampled Functional Data
fechner Fechnerian Scaling of Discrete Object Sets
ff memory-efficient storage of large data on disk and fast access functions
ffbase Basic statistical functions for package ff
ffmanova Fifty-fifty MANOVA
fftw Fast FFT and DCT based on FFTW
fgac Generalized Archimedean Copula
fgui Function GUI
fields Tools for spatial data
filehash Simple key-value database
filehashSQLite Simple key-value database using SQLite
financial Solving financial problems in R
finebalance Approximate fine balance when exact fine balance is not achievable
fingerprint Functions to operate on binary fingerprint data
fisheyeR Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
fishmethods Fisheries Methods and Models in R
fit4NM NONMEM platform
fitDRC Fitting Density Ratio Classes
fitdistrplus Help to fit of a parametric distribution to non-censored or censored data
flashClust Implementation of optimal hierarchical clustering
flexclust Flexible Cluster Algorithms
flexmix Flexible Mixture Modeling
flsa Path algorithm for the general Fused Lasso Signal Approximator
flubase Baseline of mortality free of influenza epidemics
flux Flux rate calculation from dynamic closed chamber measurements
fma Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
fmri Analysis of fMRI experiments
fmsb Functions for medical statistics book with some demographic data
foba greedy variable selection
forams Foraminifera and Community Ecology Analyses
foreach Foreach looping construct for R
forecast Forecasting functions for time series
foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ..
forensic Statistical Methods in Forensic Genetics
forensim Statistical tools for the interpretation of forensic DNA mixtures
fork R functions for handling multiple processes
formatR Format R Code Automatically
formula.tools Utilities for working with formulas, expressions, calls and other R objects
fortunes R Fortunes
forward Forward search
fossil Palaeoecological and Palaeogeographical Analysis Tools
fpc Flexible procedures for clustering
fpca Restricted MLE for Functional Principal Components Analysis
fpow Computing the noncentrality parameter of the noncentral F distribution
fpp Data sets for the "Forecasting: principles and practice" workshop by Rob J Hyndman, June 2011
fptdApprox Approximation of first-passage-time densities for diffusion processes
fracdiff Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
fractal Insightful Fractal Time Series Modeling and Analysis
fractaldim Estimation of fractal dimensions
fractalrock Generate fractal time series with non-normal returns distribution
frailtyHL Frailty Models via H-likelihood
frailtypack Frailty models using maximum penalized likelihood estimation
frbf Implementation of the "Flexible kernels for RBF network" algorithm
freqMAP Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
frontier Stochastic Frontier Analysis
fso Fuzzy Set Ordination
ftnonpar Features and Strings for Nonparametric Regression
fts R interface to tslib (a time series library in c++)
ftsa Functional time series analysis
fun Use R for Fun
functional Curry, Compose, and other higher-order functions
futile Futile base package
futile.any Futile library to provide some polymorphism
futile.logger Futile logger subsystem
futile.matrix Futile matrix utilities
futile.options Futile options management
futile.paradigm A framework for working in a functional programming paradigm in R
fuzzyFDR Exact calculation of fuzzy decision rules for multiple testing
fuzzyOP Fuzzy numbers and the main mathematical operations
fuzzyRankTests Fuzzy Rank Tests and Confidence Intervals
fwdmsa Forward search for Mokken scale analysis
fxregime Exchange Rate Regime Analysis
GA4Stratification A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
GAD GAD: Analysis of variance from general principles
GAMBoost Generalized linear and additive models by likelihood based boosting
GAMens Applies GAMbag, GAMrsm and GAMens ensemble classifiers for binary classification
GANPA Gene Association Network-based Pathway Analysis
GANPAdata The GANPA Datasets Package
GB2 Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation
GDD GD device for creating bitmap graphics as jpeg, png or gif files using gd library
GEOmap Topographic and Geologic Mapping
GEVcdn GEV conditonal density estimation network
GExMap A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data
GGEBiplotGUI GGE Biplots in R
GGMselect Gaussian Graphs Models selection
GGally Extension to ggplot2
GLDEX Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
GOFSN Goodness-of-fit tests for the family of skew-normal models
GOSim Computation of functional similarities between GO terms and gene products; GO enrichement analysis
GPArotation GPA Factor Rotation
GPseq gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
GRRGI Gauge R and R Confidence Intervals
GSA Gene set analysis
GSM Gamma Shape Mixture
GUTS GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model
GWAF Genome-Wide Association analyses with Family data
GWASExactHW Exact Hardy-Weinburg testing for Genome Wide Association Studies
GWAtoolbox GWAS Quality Control
GWRM GWRM
GenABEL genome-wide SNP association analysis
GenKern Functions for generating and manipulating binned kernel density estimates
GenSA R functions for Generalized Simulated Annealing
GeneCycle Identification of Periodically Expressed Genes
GeneF Package for Generalized F-statistics
GeneNet Modeling and Inferring Gene Networks
GeneReg Construct time delay gene regulatory network
Geneclust Simulation and analysis of spatial structure of population genetics data
Geneland Detection of structure from multilocus genetic data
GeneralizedHyperbolic The generalized hyperbolic distribution
GeoXp Interactive exploratory spatial data analysis
GhcnDaily Downloads and processes GHCN daily
GillespieSSA Gillespie's Stochastic Simulation Algorithm (SSA)
GrapheR A multiplatform GUI for drawing customizable graphs in R
GrassmannOptim Grassmann Manifold Optimization
GridR Executes functions on remote hosts, clusters or grids
GriegSmith Uses Grieg-Smith method on 2 dimentional spatial data
GroupSeq Performing computations related to group sequential designs
Guerry Guerry: maps, data and methods related to Guerry (1833) "Moral Statistics of France"
g.data Delayed-Data Packages
gMCP Graph Based Multiple Comparison Procedures
gPdtest Bootstrap goodness-of-fit test for the generalized Pareto distribution
gRain Graphical Independence Networks
gRapHD Efficient selection of undirected graphical models for high-dimensional datasets
gRbase A package for graphical modelling in R
gRc Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gRim Graphical Interaction Models
gWidgets gWidgets API for building toolkit-independent, interactive GUIs
gWidgetsRGtk2 Toolkit implementation of gWidgets for RGtk2
gWidgetsWWW Toolkit implementation of the gWidgets API for use with web pages
gWidgetstcltk Toolkit implementation of gWidgets for tcltk package
gafit Genetic Algorithm for Curve Fitting
galts Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
gam Generalized Additive Models
gamair Data for "GAMs: An Introduction with R"
gamboostLSS Boosting Methods for GAMLSS Models
games Statistical Estimation of Game-Theoretic Models
gamesNws Playing games using a NWS Server
gamlss Generalized Additive Models for Location Scale and Shape
gamlss.add GAMLSS Additive
gamlss.cens Fitting an interval response variable using gamlss.family distributions
gamlss.data GAMLSS Data
gamlss.demo Demos for GAMLSS
gamlss.dist Distributions to be used for GAMLSS modelling
gamlss.mx A GAMLSS add on package for fitting mixture distributions
gamlss.nl Fitting non linear parametric GAMLSS models
gamlss.tr Generating and fitting truncated (gamlss.family) distributions
gamlss.util GAMLSS Utilities
gamm4 Generalized additive mixed models using mgcv and lme4
gap Genetic analysis package
gaussDiff Difference measures for multivariate Gaussian probability density functions
gaussquad Collection of functions for Gaussian quadrature
gbRd Utilities for processing Rd objects and files
gbev Gradient Boosted Regression Trees with Errors-in-Variables
gbm Generalized Boosted Regression Models
gbs Package for Generalized Birnbaum-Saunders Distributions
gcExplorer Graphical Cluster Explorer
gcbd GPU/CPU Benchmarking in Debian-based systems
gclus Clustering Graphics
gcmr Gaussian Copula Marginal Regression
gcmrec General class of models for recurrent event data
gcolor Provides an Inequation Algorithm Function and a solution to import DIMACS files
gdata Various R programming tools for data manipulation
gdistance distances and routes on geographical grids
gdsfmt CoreArray Genomic Data Structure (GDS) R Interface
gee Generalized Estimation Equation solver
geepack Generalized Estimating Equation Package
geiger Analysis of evolutionary diversification
genalg R Based Genetic Algorithm
geneARMA Simulate, model, and display data from a time-course microarray experiment with periodic gene expression
geneListPie Profiling a gene list into GOslim or KEGG function pie
genepi Genetic Epidemiology Design and Inference
genetics Population Genetics
genoPlotR Plot publication-grade gene and genome maps
genomatic Manages microsatellite projects. Creates 96-well maps, genotyping submission forms, rerun management, and import into statistical software
genridge Generalized ridge trace plots for ridge regression
geoPlot Performs Address Comparison
geoR Analysis of geostatistical data
geoRglm geoRglm - a package for generalised linear spatial models
geofd Spatial prediction for function value data
geomapdata Data for topographic and Geologic Mapping
geometry Mesh generation and surface tesselation
geonames Interface to www.geonames.org web service
geophys Geophysics, Continuum Mechanics, Mogi Model
geosphere Spherical Trigonometry
geozoo Zoo of Geometric Objects
getopt C-like getopt behavior
ggcolpairs Combination of GGplot2 plots into a matrix based on data columns
ggdendro Tools for extracting dendrogram and tree diagram plot data for use with ggplot
ggm Graphical Gaussian Models
ggplot2 An implementation of the Grammar of Graphics
ghyp A package on the generalized hyperbolic distribution and its special cases
giRaph The giRaph package for graph representation in R
gibbs.met Naive Gibbs Sampling with Metropolis Steps
glasso Graphical lasso- estimation of Gaussian graphical models
gld Estimation and use of the generalised (Tukey) lambda distribution
gllm Generalised log-linear model
glm2 Fitting Generalized Linear Models
glmc Fitting Generalized Linear Models Subject to Constraints
glmdm R Code for Simulation of GLMDM
glmmAK Generalized Linear Mixed Models
glmmBUGS Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
glmmML Generalized linear models with clustering
glmnet Lasso and elastic-net regularized generalized linear models
glmnetcr Fit a penalized constrained continuation ratio model for predicting an ordinal response
glmpath L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glmpathcr Fit a penalized continuation ratio model for predicting an ordinal response
glmperm Inference in Generalized Linear Models
glmulti GLM model selection and multimodel inference made easy
globalboosttest Testing the additional predictive value of high-dimensional data
glogis Fitting and Testing Generalized Logistic Distributions
glpk GNU Linear Programming Kit
glpkAPI R Interface to C API of GLPK
glrt Generalized Logrank Tests for Interval-censored Failure Time Data
gmaps Wrapper and auxilliary functions for maps package to work with grid graphics system
gmm Generalized Method of Moments and Generalized Empirical Likelihood
gmodels Various R programming tools for model fitting
gmp Multiple Precision Arithmetic
gmt Interface between GMT Map-Making Software and R
gmvalid Validation of graphical models
gnm Generalized Nonlinear Models
gnumeric Read data from files readable by gnumeric
goalprog Weighted and lexicographical goal programming and optimization
gof Model-diagnostics based on cumulative residuals
gogarch Generalized Orthogonal GARCH (GO-GARCH) models
gooJSON Google JSON Data Interpreter for R
googleVis Interface between R and the Google Visualisation API
googlebigquery R client library for communicating with the Google Bigquery service
gpairs gpairs: The Generalized Pairs Plot
gpclib General Polygon Clipping Library for R
gplots Various R programming tools for plotting data
gpls Classification using generalized partial least squares
gptk Gaussian Processes Tool-Kit
gputools A few GPU enabled functions
grImport Importing Vector Graphics
grade Provides functions for matching student-answers to teacher answers for a variety of data types
granova Graphical Analysis of Variance
granovaGG Graphical Analysis of Variance Using ggplot2
graphComp Visual graph comparison
graphicsQC Quality Control for Graphics in R
graphite GRAPH Interaction from pathway Topological Environment
gregmisc Greg's Miscellaneous Functions
gridBase Integration of base and grid graphics
gridExtra functions in Grid graphics
grofit The package was developed to fit fit many growth curves obtained under different conditions
grouped Regression Analysis of Grouped and Coarse Data
grplasso Fitting user specified models with Group Lasso penalty
grpreg Regularization paths for regression models with grouped covariates
grt General Recognition Theory
gsDesign Group Sequential Design
gsarima Two functions for Generalized SARIMA time series simulation
gsc Generalised Shape Constraints
gsl wrapper for the Gnu Scientific Library
gsmoothr Smoothing tools
gss General Smoothing Splines
gstat spatial and spatio-temporal geostatistical modelling, prediction and simulation
gstudio GeneticStudio packages for R
gsubfn Utilities for strings and function arguments
gtcorr Calculate efficiencies of group testing algorithms with correlated responses
gtools Various R programming tools
gumbel Gumbel copula
gvlma Global Validation of Linear Models Assumptions
gwerAM Controlling the genome-wide type I error rate in association mapping experiments
HAC Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)
HAPim HapIM
HDMD Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
HDclassif High Dimensionnal Supervised Classification and Clustering
HFWutils csv import, csv export, garbage collection,string matching and passing by reference
HGLMMM Hierarchical Generalized Linear Models
HH Statistical Analysis and Data Display: Heiberger and Holland
HI Simulation from distributions supported by nested hyperplanes
HLMdiag Diagnostic tools for two-level normal hierarchical linear models
HMM HMM - Hidden Markov Models
HMR Flux estimation with static chamber data
HPbayes Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
HSAUR A Handbook of Statistical Analyses Using R
HSAUR2 A Handbook of Statistical Analyses Using R (2nd Edition)
HSROC Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
HTMLUtils Facilitates automated HTML report creation
HWEBayes Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing
HWEintrinsic Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
HadoopStreaming Utilities for using R scripts in Hadoop streaming
HapEstXXR HapEstXXR
Haplin Analyzing case-parent triad and/or case-control data with SNP haplotypes
HaploSim HaploSim
HardyWeinberg Graphical tests for Hardy-Weinberg equilibrium
HiDimDA High Dimensional Discriminant Analysis
HiddenMarkov Hidden Markov Models
HistData Data sets from the history of statistics and data visualization
Hmisc Harrell Miscellaneous
Hotelling Hotelling's T-squared test and variants
HumMeth27QCReport HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays
HybridMC Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
HydroMe Estimation of Soil Hydraulic Parameters from Experimental Data
HyperbolicDist The hyperbolic distribution
haarfisz Software to perform Haar Fisz transforms
hacks Convenient R Functions
halp Show certain type of comments from function bodies as "live-help"
hapassoc Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
haplo.ccs Estimate Haplotype Relative Risks in Case-Control Data
haplo.stats Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
hapsim Haplotype Data Simulation
hash Full feature implementation of hash/associated arrays/dictionaries
hbim Hill/Bliss Independence Model for Combination Vaccines
hbmem Hierarchical Bayesian Analysis of Recognition Memory
hda Heteroscedastic Discriminant Analysis
hddplot Use known groups in high-dimensional data to derive scores for plots
hdeco Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
hdf5 HDF5
hdrcde Highest density regions and conditional density estimation
heatmap.plus Heatmap with more sensible behavior
heavy Package for outliers accomodation using heavy-tailed distributions
helloJavaWorld Hello Java World
helpr Help for R
heplots Visualizing Tests in Multivariate Linear Models
hergm Hierarchical Exponential-Family Random Graph Models
hett Heteroscedastic t-regression
hexView Viewing Binary Files
hexbin Hexagonal Binning Routines
hgam High-dimensional Additive Modelling
hglm Hierarchical Generalized Linear Models
hier.part Hierarchical Partitioning
highlight Syntax highlighter
hints Provide hints on what to do next
hisemi Hierarchical Semiparametric Regression of Test Statistics
histogram Construction of regular and irregular histograms with different options for automatic choice of bins
hive Hadoop InteractiVE
hlr Hidden Logistic Regression
hmm.discnp Hidden Markov models with discrete non-parametric observation distributions
holdem Texas Holdem simulator
homals Gifi Methods for Optimal Scaling
homeR Functions useful for building physics
homtest Homogeneity tests for Regional Frequency Analysis
hopach Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
hot Computation on micro-arrays
hotspots Hot spots
howmany A lower bound for the number of correct rejections
hsmm Hidden Semi Markov Models
hts Hierarchical and grouped time series
httpRequest Basic HTTP Request
huge High-dimensional Undirected Graph Estimation
hwde Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci
hwriter HTML Writer - Outputs R objects in HTML format
hybridHclust Hybrid hierarchical clustering
hydroGOF Goodness-of-fit functions for comparison of simulated and observed hydrological time series
hydroTSM Time series management, analysis and interpolation for hydrological modelling
hyperSpec Interface for hyperspectral data sets, i.e. spectra + meta information (spatial, time, concentration, …)
hyperdirichlet A generalization of the Dirichlet distribution
hypergeo The hypergeometric function
hypred Simulation of genomic data in applied genetics
IBrokers R API to Interactive Brokers Trader Workstation
ICC Functions facilitating the estimation of the Intraclass Correlation Coefficient
ICE Iterated Conditional Expectation
ICEinfer Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
ICS Tools for Exploring Multivariate Data via ICS/ICA
ICSNP Tools for Multivariate Nonparametrics
IDPmisc Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
IFP Identifying functional polymorphisms in genetic association studies
IMIS Increamental Mixture Importance Sampling
IPSUR Introduction to Probability and Statistics Using R
IQCC Improved Quality Control Charts
IQMNMR Identification and Quantification of Metabolites by Using 1D 1H NMR FID
ISDA.R interval symbolic data analysis for R
ISOcodes Selected ISO codes
ISOweek Week of the year and weekday according to ISO 8601
ISwR Introductory Statistics with R
Icens NPMLE for Censored and Truncated Data
ImageMetrics Facilitates image analysis for social scientists
Imap Interactive Mapping
ImpactIV Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
IndependenceTests Nonparametric tests of independence between random vectors
InfDim Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories
IniStatR Initiation à la Statistique avec R
Interpol Interpolation of amino acid sequences
Iso Functions to perform isotonic regression
IsoGene Testing for monotonic relationship between gene expression and doses in a microarray experiment
IsotopeR IsotopeR
iBUGS An Interface to R2WinBUGS by gWidgets
iCluster Integrative clustering of multiple genomic data types
iGenomicViewer Tool for sending interactive bioinformatic heatmaps with tool-tip content
iRefR iRefIndex Manager
iRegression iRegression
iSubpathwayMiner The package can implement the graph-based reconstruction, analyses, and visualization of the KEGG pathways
iWebPlots Interactive web-based plots
ibdreg Regression Methods for IBD Linkage With Covariates
ibr Iterative Bias Reduction
ic.infer Inequality constrained inference in linear normal situations
ic50 Standardized high-throughput evaluation of cell-based compound screens
icaOcularCorrection Independent Components Analysis (ICA) based eye-movement correction
icomp ICOMP criterion
identity Jacquard Condensed Coefficients of Identity
idr Irreproducible discovery rate
ieeeround Functions to set and get the IEEE rounding mode
ifa Independent Factor Analysis
ifs Iterated Function Systems
ifultools Insightful Research Tools
igraph Network analysis and visualization
igraphtosonia Convert iGraph graps to SoNIA .son files
iid.test iid-test
imguR Share plots using the imgur.com image hosting service
imprProbEst Minimum distance estimation in an imprecise probability model
imputation imputation
impute impute: Imputation for microarray data
imputeMDR The Multifactor Dimensionality Reduction (MDR) Analysis for Imcomplete Data
indicspecies Functions to assess the strength and significance of relationship of species site group associations
ineq Measuring Inequality, Concentration, and Poverty
inference Functions to extract inferential values of a fitted model object
influence.ME Tools for detecting influential data in mixed effects models
infoDecompuTE Information Decomposition of Two-phase Experiments
infochimps An R wrapper for the infochimps.com API services
informR informR: R Tools for Creating Sequence Statistics
infotheo Information-Theoretic Measures
inline Inline C, C++, Fortran function calls from R
inlinedocs Convert inline comments to documentation
insideRODE insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes
intamap procedures for automated interpolation
intamapInteractive procedures for automated interpolation - methods only to be used interactively, not included in intamap package
intcox Iterated Convex Minorant Algorithm for interval censored event data
integrOmics end of integrOmics package
integrativeME integrative mixture of experts
interactivity toggle R interactive mode
interval Weighted Logrank Tests and NPMLE for interval censored data
intervals Tools for working with points and intervals
introgress methods for analyzing introgression between divergent lineages
ipdmeta Tools for Individual patient data and Mixed-level Meta-analysis
iplots iPlots - interactive graphics for R
ipptoolbox IPP Toolbox
ipred Improved Predictors
ipw Estimate inverse probability weights
irlba Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
irr Various Coefficients of Interrater Reliability and Agreement
irtProb Utilities and Probability Distributions Related to Multidimensional Person Item Response Models (IRT)
irtoys Simple interface to the estimation and plotting of IRT models
isa2 The Iterative Signature Algorithm
isdals Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
ismev An Introduction to Statistical Modeling of Extreme Values
isocir Isotonic Inference for Circular data
isopam Isopam (Clustering)
isopat Calculation of isotopic pattern for a given molecular formula
isotone Active set and generalized PAVA for isotone optimization
isva Independent Surrogate Variable Analysis
iteRates Parametric rate comparison
iterLap Approximate probability densities by iterated Laplace Approximations
iterators Iterator construct for R
itertools Iterator Tools
its Irregular Time Series
itsmr Time series analysis package for students
iv Information Visualisation with UML and Graphs
ivivc A data analysis tool for in vitro-in vivo correlation (IVIVC)
JADE JADE and ICA performance criteria
JGR JGR - Java Gui for R
JJcorr Calculates polychorical correlations for several copula families
JM Joint Modelling of Longitudinal and Survival Data
JOP Joint Optimization Plot
JavaGD Java Graphics Device
Johnson Johnson Transformation
JointModeling Joint Modelling of Mean and Dispersion
JudgeIt JudgeIt
Julia Fractal Image Data Generator
jit Just-in-time compiler for the R language
jointDiag Joint Approximate Diagonalization of a set of square matrices
jpeg Read and write JPEG images
KFAS Kalman filter and smoothers for exponential family state space models
KMsurv Data sets from Klein and Moeschberger (1997), Survival Analysis
Kendall Kendall rank correlation and Mann-Kendall trend test
KernSmooth Functions for kernel smoothing for Wand & Jones (1995)
KernSmoothIRT Nonparametric Item Reponse Theory
KrigInv Kriging-based Inversion for Deterministic and Noisy Computer Experiments
KsPlot Check the power of a statistical model
kappalab Non-additive measure and integral manipulation functions
kerdiest Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
kerfdr semi-parametric kernel-based approach to local fdr estimations
kernelPop Spatially explicit population genetic simulations
kernlab Kernel-based Machine Learning Lab
kin.cohort Analysis of kin-cohort studies
kinfit Routines for fitting kinetic models to chemical degradation data
kinship mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees
kinship2 Pedigree functions
kknn Weighted k-Nearest Neighbors
klaR Classification and visualization
klausuR Multiple Choice Test Evaluation
klin Linear equations with Kronecker structure
km.ci Confidence intervals for the Kaplan-Meier estimator
kmi Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
kml K-Means for Longitudinal Data (KmL)
kml3d K-means for joint Longitudinal data
knn knn-gcv
knncat Nearest-neighbor classification with categorical variables
knnflex A more flexible KNN
knorm Microarray Data From Multiple Biologically Interrelated Experiments
kohonen Supervised and unsupervised self-organising maps
ks Kernel smoothing
kst Knowledge Space Theory
kulife Data sets and functions from the Faculty of Life Sciences, University of Copenhagen
kza Kolmogorov-Zurbenko Adaptive Filters
kzft Kolmogorov-Zurbenko Fourier Transform and Applications
kzs Kolmogorov-Zurbenko Spatial Smoothing and Applications
LCAextend Latent Class Analysis (LCA) with familial dependence in extended pedigrees
LDdiag Link Function and Distribution Diagnostic Test for Social Science Researchers
LDheatmap Graphical display of pairwise linkage disequilibria between SNPs
LDtests Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
LGS simulating Linkage Group Selection (LGS)
LIM Linear Inverse Model examples and solution methods
LIStest Longest Increasing Subsequence Independence Test
LLAhclust Hierarchical clustering of variables or objects based on the likelihood linkage analysis method
LLdecomp Decomposes a set of variables into cliques and separators
LMERConvenienceFunctions A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions
LN3GV LN3GV
LPCM Local principal curve methods
LS2W Locally stationary two-dimensional wavelet process estimation scheme
LSD Lots of Superior Depictions
LTPDvar LTPD plans for sampling inspection by variables
LVQTools Learning Vector Quantization Tools
LambertW Gaussianize and analyze skewed, heavy-tailed data
LaplacesDemon Software for Bayesian Inference
LargeRegression Large Regressions
LeLogicielR Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
LearnBayes Functions for Learning Bayesian Inference
LearnEDA Functions for Learning Exploratory Data Analysis
LiblineaR Linear Predictive Models Based On The Liblinear C/C++ Library
LifeTables A package to implement HMD model life table system
Lmoments L-moments and quantile mixtures
LogConcDEAD Log-concave Density Estimation in Arbitrary Dimensions
LogicForest Logic Forest
LogicReg Logic Regression
LogitNet Infer network based on binary arrays using regularized logistic regression
LoopAnalyst A collection of tools to conduct Levins' Loop Analysis
LowRankQP Low Rank Quadratic Programming
labdsv Ordination and Multivariate Analysis for Ecology
labeling Axis Labeling
labeltodendro Convert labels or tables to a dendrogram
labstatR Libreria del Laboratorio di Statistica con R
laeken Estimation of indicators on social exclusion and poverty
laercio Duncan test, Tukey test and Scott-Knott test
lago An efficient kernel algorithm for rare target detection and unbalanced classification
lancet.iraqmortality Surveys of Iraq Mortality Published in The Lancet
landsat Radiometric and topographic correction of satellite imagery
languageR Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
lars Least Angle Regression, Lasso and Forward Stagewise
laser Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2 L1 constrained estimation aka ‘lasso’
lassoshooting L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
last.call Utility for returning previous commands as unevaluated calls and the full context of function calls
latdiag Draws diagrams useful for checking latent scales
latentnet Latent position and cluster models for statistical networks
lattice Lattice Graphics
latticeDensity Density estimation and nonparametric regression on irregular regions
latticeExtra Extra Graphical Utilities Based on Lattice
latticedl Lattice direct labels
latticist A graphical user interface for exploratory visualisation
lavaan Latent Variable Analysis
lawstat An R package for biostatistics, public policy, and law
lazy Lazy Learning for Local Regression
lcd Learn Chain graphs via Decomposition
lcda Latent Class Discriminant Analysis
lcmm Estimation of various latent class mixed models and joint latent class mixed models
lcmr lcmr package
ldDesign Design of experiments for detection of linkage disequilibrium
lda Collapsed Gibbs sampling methods for topic models
lda.cv Cross-validation for linear discriminate analysis
ldbounds Lan-DeMets Method for Group Sequential Boundaries
ldlasso LD LASSO Regression for SNP Association Study
leaps regression subset selection
leiv Bivariate linear errors-in-variables estimation
lemma Laplace approximated EM Microarray Analysis
lessR Less Code, More Results
lfe Linear Group Fixed Effects
lga Tools for linear grouping analysis (LGA)
lgtdl A set of methods for longitudinal data objects
lhs Latin Hypercube Samples
libamtrack libamtrack package
lifecontingencies Package to perform actuarial evaluation of life contingencies
limSolve Solving Linear Inverse Models
limitplot Jitter/CI Plot with Ordered Points Below the Limit of Detection
linkcomm Tools for Generating, Visualizing, and Analysing Link Communities in Networks
linprog Linear Programming / Optimization
list Statistical Methods for the Item Count Technique and List Experiment
ljr Logistic Joinpoint Regression
lmPerm Permutation tests for linear models
lmSupport Support for Linear Models
lme4 Linear mixed-effects models using S4 classes
lmeSplines lmeSplines
lmec Linear Mixed-Effects Models with Censored Responses
lmm Linear mixed models
lmmfit Goodness-of-fit-measures for linear mixed models with one-level-grouping
lmmlasso Linear mixed-effects models with Lasso
lmodel2 Model II Regression
lmom L-moments
lmomRFA Regional frequency analysis using L-moments
lmomco L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
lmtest Testing Linear Regression Models
localdepth Local Depth
locfdr Computes local false discovery rates
locfit Local Regression, Likelihood and Density Estimation
locpol Kernel local polynomial regression
lodplot Plot a genome scan
log10 Decimal log plotting in two and three dimensions
log4r A simple logging system for R, based on log4j
logcondens Estimate a Log-Concave Probability Density from iid Observations
logcondiscr Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations
logging a tentative logging package
logistf Firth's bias reduced logistic regression
loglognorm Double log normal distribution functions
logregperm Inference in Logistic Regression
logspline Logspline density estimation routines
lokern Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
longRPart Recursive partitioning of longitudinal data using mixed-effects models
longitudinal Analysis of Multiple Time Course Data
longitudinalData Longitudinal Data
longmemo Statistics for Long-Memory Processes (Jan Beran) – Data and Functions
longpower Sample size calculations for longitudinal data
lordif Logistic Regression Differential Item Functioning using IRT
lossDev Robust Loss Development Using MCMC
lpSolve Interface to Lp_solve v. 5.5 to solve linear/integer programs
lpSolveAPI R Interface for lp_solve version 5.5.2.0
lpc Lassoed principal components for testing significance of features
lpridge Local Polynomial (Ridge) Regression
lqa Penalized Likelihood Inference for GLMs
lsa Latent Semantic Analysis
lspls LS-PLS Models
lss the accelerated failure time model to right censored data based on least-squares principle
ltm Latent Trait Models under IRT
ltsa Linear time series analysis
lubridate Make dealing with dates a little easier
luca Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
M3 Reading M3 files
MADAM This package provides some basic methods for meta-analysis
MAINT.Data Model and Analize Interval Data
MALDIquant Quantitative analysis of MALDI-TOF MS data
MAMA Meta-Analysis of MicroArry
MAMSE Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights
MAPLES Smoothed age profile estimation
MARSS Multivariate Autoregressive State-Space Modeling
MASS Support Functions and Datasets for Venables and Ripley's MASS
MAT Multidimensional Adaptive Testing (MAT)
MAc Meta-Analysis with Correlations
MAclinical Class prediction based on microarray data and clinical parameters
MAd Meta-Analysis with Mean Differences
MBA Multilevel B-spline Approximation
MBESS MBESS
MCAPS MCAPS data and results
MCE Tools for evaluating Monte Carlo Error
MCLIME Simultaneous Estimation of the Regression Coefficients and Precision Matrix
MCMCglmm MCMC Generalised Linear Mixed Models
MCMChybridGP Hybrid Markov chain Monte Carlo using Gaussian Processes
MCMCpack Markov chain Monte Carlo (MCMC) Package
MCPAN Multiple comparisons using normal approximation
MCPMod Design and Analysis of Dose-Finding Studies (see also DoseFinding package)
MCUSUM Multivariate Cumulative Sum (MCUSUM) Control Chart
MChtest Monte Carlo hypothesis tests with Sequential Stopping
MDR Detect gene-gene interactions using multifactor dimensionality reduction
MEMSS Data sets from Mixed-effects Models in S
MEWMA Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart
MFDA Model Based Functional Data Analysis
MFDF Modeling Functional Data in Finance
MFSAS Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans
MHadaptive General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
MISA Bayesian Model Search and Multilevel Inference for SNP Association Studies
MIfuns Pharmacometric tools for data preparation, modeling, simulation, and reporting
MImix Mixture summary method for multiple imputation
MKLE Maximum kernel likelihood estimation
MKmisc Miscellaneous Functions from M. Kohl
MLCM Maximum Likelihood Conjoint Measurement
MLDA Methylation Linear Discriminant Analysis (MLDA)
MLDS Maximum Likelihood Difference Scaling
MLEcens Computation of the MLE for bivariate (interval) censored data
MLPAstats MLPA analysis to detect gains and loses in genes
MMG Mixture Model on Graphs
MMIX Model selection uncertainty and model mixing
MMST DATASETS FROM MMST
MNM Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
MNP R Package for Fitting the Multinomial Probit Model
MOCCA Multi-objective optimization for collecting cluster alternatives
MPV Data Sets from Montgomery, Peck and Vining's Book
MSBVAR Markov-Switching, Bayesian, Vector Autoregression Models
MSG Data and functions for the book Modern Statistical Graphics
MSToolkit The MSToolkit library for clinical trial design
MTSKNN Multivariate two-sample tests based on K-nearest-neighbors
MUCflights Munich Franz-Josef-Strauss Airport Pattern Analysis
MVA An Introduction to Applied Multivariate Analysis with R
MVR Mean-Variance Regularization
MVpower Give power for a given effect size using multivariate classification methods
MaXact Exact max-type Cochran-Armitage trend test(CATT)
MarkedPointProcess Analysis of Marks of Marked Point Processes
MasterBayes ML and MCMC Methods for Pedigree Reconstruction and Analysis
MatchIt MatchIt
Matching Multivariate and Propensity Score Matching with Balance Optimization
Matrix Sparse and Dense Matrix Classes and Methods
MatrixEQTL Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
MatrixModels Modelling with Sparse And Dense Matrices
McParre Run a Regenerative Markov chain in Parallel on a Cluster
Mcomp Data from the M-competitions
MeDiChI MeDiChI ChIP-chip deconvolution library
MergeGUI A GUI for Merging Datasets in R
MetABEL meta-analysis of genome-wide SNP association results
MetaPCA MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
MetaQC MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
MetabolAnalyze Probabilistic latent variable models for metabolomic data
Metabonomic GUI for Metabonomic Analysis
Meth27QC Meth27QC: sample quality analysis, and sample control analysis
MethComp Functions for analysis of method comparison studies
Miney Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
MiscPsycho Miscellaneous Psychometric Analyses
MissingDataGUI A GUI for Missing Data Exploration
MixSim Simulating Data to Study Performance of Clustering Algorithms
Modalclust Hierarchical Modal Clustering
ModelGood Validation of prediction models
ModelMap Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps
MortalitySmooth Smoothing Poisson counts with P-splines
MplusAutomation Automating Mplus Model Estimation and Interpretation
MsatAllele Visualizes the scoring and binning of microsatellite fragment sizes
MuMIn Multi-model inference
MultEq Multiple equivalence tests and simultaneous confidence intervals
MultiPhen MultiPhen, a package for the genetic association testing of multiple phenotypes
Multiclasstesting Performance of N-ary classification testing
mAr Multivariate AutoRegressive analysis
mFilter Miscellaneous time series filters
mRm mRm: An R package for conditional maximum likelihood estimation in mixed Rasch models
maRketSim Market simulator for R
maanova Tools for analyzing Micro Array experiments
magic create and investigate magic squares
magma Matrix Algebra on GPU and Multicore Architectures
magnets Simulate micro-magnets dynamics
makesweave Literate Programming with Make and Sweave
mapLD Linkage Disequilibrium Mapping
mapReduce mapReduce - flexible mapReduce algorithm for parallel computation
mapdata Extra Map Databases
mapproj Map Projections
maps Draw Geographical Maps
maptools Tools for reading and handling spatial objects
maptree Mapping, pruning, and graphing tree models
mar1s Multiplicative AR(1) with Seasonal Processes
marelac Tools for Aquatic Sciences
marelacTeaching Datasets and tutorials for use in aquatic sciences
margLikArrogance Marginal Likelihood Computation via Arrogance Sampling
marginTree marginTree: margin trees for high-dimensional classification
marginalmodelplots Marginal Mean Model Plots
mathgraph Directed and undirected graphs
maticce Mapping Transitions in Continuous Character Evolution
matlab MATLAB emulation package
matrixStats Methods that apply to rows and columns of a matrix
matrixcalc Collection of functions for matrix differential calculus
maxLik Maximum Likelihood Estimation
maxLinear Conditional Samplings for Max-Linear Models
maxent Text Classification Using Low-memory Multinomial Logistic Regression
maxstat Maximally Selected Rank Statistics
mblm Median-Based Linear Models
mbmdr Model Based Multifactor Dimensionality Reduction
mboost Model-Based Boosting
mc2d Tools for Two-Dimensional Monte-Carlo Simulations
mcclust Process an MCMC Sample of Clusterings
mcga Machine coded genetic algorihms for real-valued optimization problems
mcgibbsit Warnes and Raftery's MCGibbsit MCMC diagnostic
mclogit Mixed Conditional Logit
mclust Model-Based Clustering / Normal Mixture Modeling
mcmc Markov Chain Monte Carlo
mcmcplots Create Plots from MCMC Output
mco Multi criteria optimization algorithms and related functions
mcprofile Multiple Contrast Profiles
mcsm Functions for Monte Carlo Methods with R
mda Mixture and flexible discriminant analysis
meboot Maximum Entropy Bootstrap for Time Series
mecdf Multivariate Empirical Cumulative Distribution Functions
medAdherence Medication Adherence: Commonly Used Definitions
mederrRank Bayesian Methods for Identifying the Most Harmful Medication Errors
mediation R Package for Causal Mediation Analysis
mefa Multivariate Data Handling in Ecology and Biogeography
mefa4 Multivariate Data Handling with S4 Classes and Sparse Matrices
meifly Interactive model exploration using GGobi
mem Moving Epidemics Method R Package
memisc Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
memoise Memoise functions
merror Accuracy and Precision of Measurements
meta Meta-Analysis with R
metaLik Likelihood inference in meta-analysis and meta-regression models
metaMA Meta-analysis for MicroArrays
metacor Meta-analysis of correlation coefficients
metafor Meta-Analysis Package for R
metatest Fit and test metaregression models
mfp Multivariable Fractional Polynomials
mfr Minimal Free Resolutions of Graph Edge Ideals
mgcv GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
mgpd Functions for multivariate generalized Pareto distribution (MGPD of Type II)
mhsmm Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences
mht Multiple Hypotheses Testing For Variable Selection
mhurdle Estimation of models with limited dependent variables
mi Missing Data Imputation and Model Checking
miP Multiple Imputation Plots
miRtest combined miRNA- and mRNA-testing
micEcon Microeconomic Analysis and Modelling
micEconAids Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconCES Analysis with the Constant Elasticity of Scale (CES) function
micEconSNQP Symmetric Normalized Quadratic Profit Function
mice Multivariate Imputation by Chained Equations
microbenchmark Sub microsecond accurate timing functions
migui Graphical User Interface of the mi Package
mimR A package for graphical modelling in R
minPtest Gene region-level testing procedure for SNP data, using the min P test resampling approach
miniGUI tktcl quick and simple function GUI
minimax Minimax distribution family
minpack.lm R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK
minqa Derivative-free optimization algorithms by quadratic approximation
minxent Entropy Optimization Distributions
mirf MULTIPLE IMPUTATION AND RANDOM FORESTS FOR UNOBSERVABLE PHASE, HIGH-DIMENSIONAL DATA
mirt Multidimensional Item Response Theory
misc3d Miscellaneous 3D Plots
miscTools Miscellanneous Tools and Utilities
missForest Nonparametric Missing Value Imputation using Random Forest
missMDA Handling missing values with/in multivariate data analysis (principal component methods)
mitools Tools for multiple imputation of missing data
mix Estimation/multiple Imputation for Mixed Categorical and Continuous Data
mixAK Mixture of methods including mixtures
mixOmics Omics Data Integration Project
mixPHM Mixtures of proportional hazard models
mixRasch Mixture Rasch Models with JMLE
mixdist Finite Mixture Distribution Models
mixedQF Estimator with Qudratics Forms in Mixeds Models
mixer Random graph clustering
mixexp Design and analysis of mixture experiments
mixfdr Computes false discovery rates and effect sizes using normal mixtures
mixlow Mixlow Method for Assessing Drug Synergism/Antagonism
mixreg Functions to fit mixtures of regressions
mixsep Forensic Genetics DNA Mixture Separation
mixsmsn Fitting finite mixture of scale mixture of skew-normal distributions
mixstock functions for mixed stock analysis
mixtools Tools for analyzing finite mixture models
mkin Routines for fitting kinetic models with one or more state variables to chemical degradation data
mkssd Efficient multi-level k-circulant supersaturated designs
mlbench Machine Learning Benchmark Problems
mlegp Maximum Likelihood Estimates of Gaussian Processes
mleur Maximum likelihood unit root test
mlmRev Examples from Multilevel Modelling Software Review
mlmmm ML estimation under multivariate linear mixed models with missing values
mlogit multinomial logit model
mlogitBMA Bayesian Model Averaging for Multinomial Logit Models
mmap Map Pages of Memory
mmcm Modified Maximum Contrast Method
mnormt The multivariate normal and t distributions
mnspc Multivariate Nonparametric Statistical Process Control
moc GENERAL NONLINEAR MIXTURES OF CURVES
modTempEff Modelling temperature effects using time series data
modeest Mode Estimation
modehunt Multiscale Analysis for Density Functions
modelcf Modeling physical computer codes with functional outputs using clustering and dimensionality reduction
modelfree Model-free estimation of a psychometric function
modeltools Tools and Classes for Statistical Models
moduleColor Basic module functions
mokken Mokken Scale Analysis in R
mombf Moment and Inverse Moment Bayes factors
moments Moments, cumulants, skewness, kurtosis and related tests
mondate Keep track of dates in terms of months
monmlp Monotone multi-layer perceptron neural network
monoProc strictly monotone smoothing procedure
monomvn Estimation for multivariate normal and Student-t data with monotone missingness
monreg Nonparametric monotone regression
moonsun Basic astronomical calculations with R
mosaic Project MOSAIC (mosaic-web.org) math and stats teaching utilities
motmot Models of Trait Macroevolution on Trees
moult Models for Analysing Moult Data
movMF Mixtures of von Mises Fisher Distributions
mpa CoWords Method
mpc MPC - Multiple Precision Complex Library
mpm Multivariate Projection Methods
mpmcorrelogram Multivariate Partial Mantel Correlogram
mprobit Multivariate probit model for binary/ordinal response
mpt Multinomial Processing Tree (MPT) Models
mra Analysis of Mark-Recapture data
mratios Inferences for ratios of coefficients in the general linear model
mrdrc Model-robust concentration-response analysis
mritc MRI tissue classification
mrt Wright & London's Modern Regression Techniques
msBreast Protein Mass Spectra Dataset from a Breast Cancer Study
msDilution Protein Mass Spectra Dataset from a Dilution Experiment
msProcess Protein Mass Spectra Processing
msProstate Protein Mass Spectra Dataset from a Prostate Cancer Study
msSurv Nonparametric Estimation for Multistate Models
mseq Modeling non-uniformity in short-read rates in RNA-Seq data
msir Model-based Sliced Inverse Regression
msm Multi-state Markov and hidden Markov models in continuous time
mspath Multi-state Path-Dependent Models in Discrete Time
msr Morse-Smale approximation, regression and visualization
mstate Data preparation, estimation and prediction in multi-state models
mtcreator Creating MAGE-TAB files using mtcreator
mtsc Multivariate Timeseries Clusters
mtsdi Multivariate time series data imputation
muRL Mailmerge using R, LaTeX, and the Web
muS2RC Splus to R Compatibility for package muStat
muStat Prentice Rank Sum Test and McNemar Test
muUtil muStat Utility Functions
mugnet Mixture of Gaussian Bayesian Network Model
muhaz Hazard Function Estimation in Survival Analysis
multcomp Simultaneous Inference in General Parametric Models
multcompView Visualizations of Paired Comparisons
multiPIM Variable Importance Analysis with Population Intervention Models
multibiplotGUI Multibiplot Analysis in R
multic Quantitative linkage analysis tools using the variance components approach
multicore Parallel processing of R code on machines with multiple cores or CPUs
multilevel Multilevel Functions
multinomRob Robust Estimation of Overdispersed Multinomial Regression Models
multipol multivariate polynomials
multisensi Multivariate Sensitivity Analysis
multitaper Multitaper Spectral Analysis
multmod Testing of multiple outcomes
multxpert Common Multiple Testing Procedures and Gatekeeping Procedures
munfold Metric Unfolding
munsell Munsell colour system
mutatr Mutable objects for R
mutoss Unified multiple testing procedures
mutossGUI A graphical user interface for the MuToss Project
mvShapiroTest Generalized Shapiro-Wilk test for multivariate normality
mvabund statistical methods for analysing multivariate abundance data
mvbutils Workspace organization, code and documentation editing, package prep and editing, etc
mvgraph Multivariate, Interactive Visualization
mvmeta Multivariate meta-analysis and meta-regression
mvna Nelson-Aalen estimator of the cumulative hazard in multistate models
mvngGrAd Software for moving grid adjustment in plant breeding field trials
mvnmle ML estimation for multivariate normal data with missing values
mvnormtest Normality test for multivariate variables
mvoutlier Multivariate outlier detection based on robust methods
mvpart Multivariate partitioning
mvsf Shapiro-Francia Multivariate Normality Test
mvtBinaryEP Generates Correlated Binary Data
mvtnorm Multivariate Normal and t Distributions
mvtnormpcs Multivariate Normal and T Distribution functions of (Dunnett, 1989)
mvtsplot Multivariate Time Series Plot
mxkssd Efficient mixed-level k-circulant supersaturated designs
NADA Nondetects And Data Analysis for environmental data
NBPSeq The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq
NCBI2R NCBI2R-An R package to navigate and annotate genes and SNPs
NISTnls Nonlinear least squares examples from NIST
NMF Algorithms and framework for Nonnegative Matrix Factorization (NMF)
NMFN Non-negative Matrix Factorization
NMMAPSlite NMMAPS Data Lite
NMRS NMR Spectroscopy
NORMT3 Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
NRAIA Data sets from "Nonlinear Regression Analysis and Its Applications"
NeMo Exceptionnal Network Motifs in biological networks
NeatMap Non-clustered heatmap alternatives
NestedCohort Survival Analysis for Cohorts with Missing Covariate Information
NetCluster Clustering for networks
NetData Network Data for McFarland's SNA R labs
NetIndices Estimating network indices, including trophic structure of foodwebs in R
NetworkAnalysis Statistical inference on populations of weighted or unweighted networks
NightDay Night and Day Boundary Plot Funtion
Nippon Japanese utility functions and data
nFDR Nonparametric Estimate of FDR Based on Bernstein Polynomials
nFactors Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
nacopula Nested Archimedean Copulas
nanop tools for nanoparticle simulation and PDF calculation
nbpMatching functions for non-bipartite optimal matching
ncdf Interface to Unidata netCDF data files
ncdf4 Interface to Unidata netCDF (version 4 or earlier) format data files
ncf spatial nonparametric covariance functions
ncomplete ncomplete
ncvreg Regularization paths for SCAD- and MCP-penalized regression models
ndl Naive Discriminative Learning
ndvits NDVI Time series extraction and analysis
neariso Near-Isotonic Regression
negenes Estimating the number of essential genes in a genome
neldermead R port of the Scilab neldermead module
network Classes for Relational Data
networksis Simulate bipartite graphs with fixed marginals through sequential importance sampling
neuRosim Functions to generate fMRI data including activated data, noise data and resting state data
neuralnet Training of neural networks
nga NGA Earthquake Ground Motion Prediction Equations
nice Get or Set UNIX Niceness
nlADG Regression in the Normal Linear ADG Model
nleqslv Solve systems of non linear equations
nlme Linear and Nonlinear Mixed Effects Models
nlmeODE Non-linear mixed-effects modelling in nlme using differential equations
nloptr R interface to NLopt
nlreg Higher Order Inference for Nonlinear Heteroscedastic Models
nlrwr Nonlinear regression with R
nls2 Non-linear regression with brute force
nlstools Tools for nonlinear regression diagnostics
nlt A nondecimated lifting transform for signal denoising
nltm Non-linear Transformation Models
nlts (non)linear time series analysis
nnDiag k-Nearest Neighbor Diagnostic Tools
nnc Nearest Neighbor Autocovariates
nncRda Improved RDA Using nnc
nnclust Nearest-neighbour tools for clustering
nnet Feed-forward Neural Networks and Multinomial Log-Linear Models
nnls The Lawson-Hanson algorithm for non-negative least squares (NNLS)
nodeHarvest Node Harvest for regression and classification
noia Implementation of the Natural and Orthogonal InterAction (NOIA) model
nonbinROC ROC-type analysis for non-binary gold standards
nonparaeff Nonparametric Methods for Measuring Efficiency and Productivity
nonrandom Stratification and matching by the propensity score
nor1mix Normal (1-d) Mixture Models (S3 Classes and Methods)
norm Analysis of multivariate normal datasets with missing values
normalp Package for exponential power distributions (EPD)
normwhn.test Normality and White Noise Testing
nortest Tests for Normality
noverlap ncomplete
np Nonparametric kernel smoothing methods for mixed data types
npRmpi Parallel nonparametric kernel smoothing methods for mixed data types
nparLD Nonparametric Analysis of Longitudinal Data in Factorial Experiments
nparcomp nparcomp-package
npde Normalised prediction distribution errors for nonlinear mixed-effect models
nplplot Plotting non-parametric linkage results
npmc Nonparametric Multiple Comparisons
npmlreg Nonparametric maximum likelihood estimation for random effect models
nppbib Nonparametric Partially-Balanced Incomplete Block Design Analysis
npst Generalization of Hewitt's Seasonality Test
nsRFA Non-supervised Regional Frequency Analysis
nullabor Tools for graphical inference
numConversion Test of accuracy of as.character() for a numeric input using the standard arithmetic
numDeriv Accurate Numerical Derivatives
nutshell Data for "R in a Nutshell"
nutshellDE Beispieldaten zu "R in a Nutshell" [deutsche Ausgabe]
nvis Combination of visualization functions for nuclear data using ggplot2 and ggcolpairs
nws R functions for NetWorkSpaces and Sleigh
OAIHarvester Harvest Metadata Using OAI-PMH v2.0
ODB Open Document Databases (.odb) management
OPE Outer-product emulator
ORDER2PARENT Estimate parent distributions with data of several order statistics
ORIClust Order-restricted Information Criterion-based Clustering Algorithm
ORMDR ORMDR
OSACC Ordered Subset Analysis for Case-Control Studies
Oarray Arrays with arbitrary offsets
OjaNP Multivariate Methods Based on the Oja Median and Related Concepts
OligoSpecificitySystem Oligo Specificity System
Oncotree Estimating oncogenetic trees
OpenCL Interface allowing R to use OpenCL
OpenRepGrid Tools to analyse repertory grid data
OrdFacReg Least squares, logistic, and Cox-regression with ordered predictors
OrdMonReg Compute least squares estimates of one bounded or two ordered isotonic regression curves
OrgMassSpecR Organic Mass Spectrometry
objectProperties A factory of self-describing properties
objectSignals objectSignals
oblique.tree Oblique Trees for Classification Data
obsSens Sensitivity analysis for Observational studies
oc OC Roll Call Analysis Software
oce Analysis of Oceanographic data
ocomposition Gibbs sampler for ordered compositional data
odesolve Solvers for Ordinary Differential Equations
odfWeave Sweave processing of Open Document Format (ODF) files
odfWeave.survey Support for odfWeave on the survey package
odprism Optimal design and performance of random intercept and slope models
ofp Object-Functional Programming
omd filter the molecular descriptors for QSAR
oncomodel Maximum likelihood tree models for oncogenesis
onemap Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
onion octonions and quaternions
opefimor Option Pricing and Estimation of Financial Models in R
openNLP openNLP Interface
openNLPmodels.en openNLP Models for English
openNLPmodels.es openNLP Models for Spanish
openair Tools for the analysis of air pollution data
opencpu.encode opencpu object encoder/decoder
openintro OpenIntro data sets and supplement functions
operator.tools Utilities for working with R's operators
operators Additional binary operators for the R language
oposSOM Package for analysis and visualization of metagenes
optBiomarker Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
optimbase R port of the Scilab optimbase module
optimsimplex R port of the Scilab optimsimplex module
optimx A Replacement and Extension of the optim() Function
optmatch Functions for optimal matching
optparse Command line option parser
optpart Optimal partitioning of similarity relations
orQA Order Restricted Assessment Of Microarray Titration Experiments
orclus ORCLUS subspace clustering
ordPens Selection and/or Smoothing of Ordinal Predictors
orddom Ordinal Dominance Statistics
ordinal Regression Models for Ordinal Data
orientlib Support for orientation data
orloca The package deals with Operations Research LOCational Analysis models
orloca.es Spanish version of orloca package
oro.dicom Rigorous - DICOM Input / Output
oro.nifti Rigorous - NIfTI+ANALYZE+AFNI Input / Output
orsk Convertinging Odds Ratio to Relative Risk with Partial Data Information
orth Multivariate Logistic Regressions Using Orthogonalized Residuals
orthogonalsplinebasis Orthogonal Bspline Basis Functions
orthopolynom Collection of functions for orthogonal and orthonormal polynomials
osDesign Design and analysis of observational studies
osmar Importing and working with OpenStreetMap-Data
ouch Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
outliers Tests for outliers
oz Plot the Australian coastline and states
PASWR PROBABILITY and STATISTICS WITH R
PBImisc A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych”
PBSadmb PBS ADMB
PBSddesolve Solver for Delay Differential Equations
PBSmapping Mapping Fisheries Data and Spatial Analysis Tools
PBSmodelling GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations
PCIT PCIT algorithm - Partial Correlation Coefficient with Information Theory
PCS Calculate the probability of correct selection (PCS)
PERregress Regression Functions and Datasets
PET Simulation and Reconstruction of PET Images
PHYLOGR Functions for phylogenetically based statistical analyses
PK Basic Non-Compartmental Pharmacokinetics
PKfit A Data Analysis Tool for Pharmacokinetics
PKgraph Model diagnostics for population pharmacokinetic models
PKmodelFinder Software for Pharmacokinetic model
PKreport A reporting pipeline for checking population pharmacokinetic model assumption
PKtools unified computational interfaces for pop PK
PL.popN Population Size Estimation
PLIS Multiplicity control using Pooled LIS statisitcs
PMA Penalized Multivariate Analysis
POT Generalized Pareto Distribution and Peaks Over Threshold
PSAgraphics Propensity Score Analysis Graphics
PSCBS Analysis of Parent-Specific DNA Copy Numbers
PSCN Parent Specific DNA Copy Number Estimation
PSM Non-Linear Mixed-Effects modelling using Stochastic Differential Equations
PTAk Principal Tensor Analysis on k modes
PairViz Visualization using Eulerian tours and Hamiltonian decompositions
Peak2Trough Estimation of the peak-to-trough ratio of a seasonal variation component
Peaks Peaks
PearsonDS Pearson Distribution System
PearsonICA Independent component analysis using score functions from the Pearson system
PerformanceAnalytics Econometric tools for performance and risk analysis
PermAlgo Permutational algorithm to simulate survival data
PhViD PhViD: a R package for PharmacoVigilance signal Detection
PhysicalActivity Process Physical Activity Accelerometer Data
PoMoS Polynomial (ordinary differential equation) Model Search
PoiClaClu Classification and clustering of sequencing data based on a Poisson model
PoissonSeq Significance analysis of sequencing data based on a Poisson log linear model
PolynomF Polynomials in R
Pomic Pattern Oriented Modelling Information Criterion
PopGenKit Useful functions for (batch) file conversion and data resampling in microsatellite datasets
PottsUtils Utility Functions of the Potts Models
PowerTOST Power and Sample size based on two one-sided t-tests (TOST) for bioequivalence studies
PredictABEL Assessment of risk prediction models
PredictiveRegression Prediction Intervals for Three Basic Statistical Models
PresenceAbsence Presence-Absence Model Evaluation
ProDenICA Product Density Estimation for ICA using tilted Gaussian density estimates
ProbForecastGOP Probabilistic weather forecast using the GOP method
ProfessR Grades Setting and Exam Maker
ProfileLikelihood Profile Likelihood for a Parameter in Commonly Used Statistical Models
ProjectTemplate Automates the creation of new statistical analysis projects
PropCIs Computes confidence intervals for single proportions, for differences in proportions, for an odds-ratio and for the relative risk in a 2x2 table
PtProcess Time Dependent Point Process Modelling
PwrGSD Power in a Group Sequential Design
p3state.msm Analyzing survival data
pGLS Generalized Least Square in comparative Phylogenetics
pROC display and analyze ROC curves
pack Convert values to/from raw vectors
packClassic Toy example of Pack Classic
packS4 Toy example of S4 package
packdep Mapping dependencies among R packages
pairwiseCI Confidence intervals for two sample comparisons
palaeoSig Significance tests for palaeoenvironmental reconstructions
paleoMAS Paleoecological Analysis
paleoTS Analyze paleontological time-series
paloma Poisson Approximation for LOcal Motif Assessment
paltran WA, WA-PLS, MW for paleolimnology
pamctdp Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns
pamm Power analysis for random effects in mixed models
pamr Pam: prediction analysis for microarrays
pan Multiple imputation for multivariate panel or clustered data
panel Panel
papply Parallel apply function using MPI
paramlink Parametric linkage analysis
paran Horn's Test of Principal Components/Factors
parcor Regularized estimation of partial correlation matrices
parfossil Parallelized functions for palaeoecological and palaeogeographical analysis
parmigene Parallel Mutual Information estimation for Gene Network reconstruction
parser Detailed R source code parser
partDSA Partitioning using deletion, substitution, and addition moves
partitionMap Partition Maps
partitionMetric Compute a distance metric between two partitions of a set
partitions Additive partitions of integers
party A Laboratory for Recursive Partytioning
parviol Parviol
pastecs Package for Analysis of Space-Time Ecological Series
pathClass Classification using biological pathways as prior knowledge
pathmox Segmentation Trees in Partial Least Squares Path Modeling
pbapply Adding Progress Bar to '*apply' Functions
pbatR P2BAT
pbivnorm Vectorized Bivariate Normal CDF
pcaPP Robust PCA by Projection Pursuit
pcalg Estimation of CPDAG/PAG and causal inference using the IDA algorithm
pcse Panel-Corrected Standard Error Estimation in R
pcurve Principal curve analysis
pdfCluster Cluster analysis via nonparametric density estimation
pdist Partitioned Distance Function
pear Package for Periodic Autoregression Analysis
pec Prediction Error Curves for Survival Models
pedantics Functions to facilitate power and sensitivity analyses for genetic studies of natrual popualtions
pedigree Pedigree functions
pedigreemm Pedigree-based mixed-effects models
pegas Population and Evolutionary Genetics Analysis System
penalized L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
penalizedLDA Penalized classification using Fisher's linear discriminant
penalizedSVM Feature Selection SVM using penalty functions
pencopula Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
pendensity Density Estimation with a Penalized Mixture Approach
pensim Simulation of high-dimensional data and parallelized repeated penalized regression
peperr Parallelised Estimation of Prediction Error
pequod Moderated regression package
perm Exact or Asymptotic permutation tests
permax permax
permtest Permutation test to compare variability within and distance between two groups
perturb Tools for evaluating collinearity
pesticides Analysis of single serving and composite pesticide residue measurements
pfda Paired Functional Data Analysis
pgam Poisson-Gamma Additive Models
pgfSweave Quality speedy graphics compilation and caching with Sweave
pgirmess Data analysis in ecology
pglm panel generalized linear model
pgs Precision of Geometric Sampling
phangorn Phylogenetic analysis in R
pheatmap Pretty Heatmaps
pheno Auxiliary functions for phenological data analysis
phitest Nonparametric goodness-of-fit methods based on phi-divergences
phmm Proportional Hazards Mixed-effects Model (PHMM)
phpSerialize Serialize R to PHP associative array
phull p-hull: a generalization of convex hull, X-Y hull and bounding rectangle
phybase Basic functions for phylogenetic analysis
phyclust Phylogenetic Clustering (Phyloclustering)
phyext An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
phylobase Base package for phylogenetic structures and comparative data
phyloclim Integrating phylogenetics and climatic niche modelling
phylosim R packge for simulating biological sequence evolution
phylotools Phylogenetic tools for Eco-phylogenetics
phytools Phylogenetic Tools for comparative biology (and other things)
pi0 Estimating the proportion of true null hypotheses for FDR
picante R tools for integrating phylogenies and ecology
pixmap Bitmap Images (“Pixel Maps”)
pkDACLASS A complete statistical analysis of MALDI-TOF Mass Spectrometry Proteomics data
plRasch Log Linear by Linear Asscociation models
plan Tools for project planning
planar Multilayer optics
playitbyr Representing and exploring data through sound
playwith A GUI for interactive plots using GTK+
plgp Particle Learning of Gaussian Processes
plink IRT Separate Calibration Linking Methods
plm Linear Models for Panel Data
plotGoogleMaps Plot HTML output with Google Maps API and your own data
plotSEMM Graphing nonlinear latent variable interactions in SEMM
plotmo Plot a model's response while varying the values of the predictors
plotpc Plot principal component histograms around a scatter plot
plotrix Various plotting functions
pls Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR)
plsRcox Partial least squares Regression for Cox models and related techniques
plsRglm Partial least squares Regression for generalized linear models
plsdof Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
plsgenomics PLS analyses for genomics
plspm Partial Least Squares Data Analysis Methods
plugdensity Plug-in Kernel Density Estimation
plus Penalized Linear Unbiased Selection
plyr Tools for splitting, applying and combining data
pmg Poor Man's GUI
pmlr Penalized Multinomial Logistic Regression
pmml Generate PMML for various models
pmr Probability Models for Ranking Data
png Read and write PNG images
poLCA Polytomous variable Latent Class Analysis
poibin The Poisson Binomial Distribution
poilog Poisson lognormal and bivariate Poisson lognormal distribution
poistweedie Poisson-Tweedie exponential family models
polspline Polynomial spline routines
polySegratio Simulate and test marker dosage for dominant markers in autopolyploids
polySegratioMM Bayesian mixture models for marker dosage in autopolyploids
polyapost Simulating from the Polya posterior
polycor Polychoric and Polyserial Correlations
polydect polydect
polynom A collection of functions to implement a class for univariate polynomial manipulations
polysat Tools for Polyploid Microsatellite Analysis
polytomous Polytomous logistic regression for fixed and mixed effects
pomp Statistical inference for partially observed Markov processes
pooh Partial Orders and Relations
popPK Summary of Population Pharmacokinetic Analysis
popbio Construction and analysis of matrix population models
popgen Statistical and Population Genetics
portes Portmanteau Tests for Time Series Models
portfolio Analysing equity portfolios
portfolioSim Framework for simulating equity portfolio strategies
potts Markov Chain Monte Carlo for Potts Models
powell Powell's UObyQA algorithm
powerGWASinteraction Power Calculations for Interactions for GWAS
powerMediation Power/Sample size calculation for mediation analysis
powerSurvEpi Power and sample size calculation for survival analysis of epidemiological studies
powerpkg Power analyses for the affected sib pair and the TDT design
ppMeasures Point pattern distances and prototypes
ppcor Partial and Semi-partial (Part) correlation
ppls Penalized Partial Least Squares
pps Functions for PPS sampling
ppstat Point Process Statistics
prLogistic Estimation of Prevalence Ratios using Logistic Models
prabclus Functions for clustering of presence-absence, abundance and multilocus genetic data
pracma Practical Numerical Math Functions
pragma Provides a pragma / directive / keyword syntax for R
predbayescor Classification rule based on Bayesian naive Bayes models with feature selection bias corrected
predmixcor Classification rule based on Bayesian mixture models with feature selection bias corrected
prefmod Utilities to fit paired comparison models for preferences
press Protein REsidue-level Structural Statistics
pressData Data sets for package PRESS–Protein REsidue-level Structural Statistics
prettyR Pretty descriptive stats
prim Patient Rule Induction Method (PRIM)
primer Functions and data for the forthcoming, A Primer of Ecology with R
princurve Fits a Principal Curve in Arbitrary Dimension
prob Elementary Probability on Finite Sample Spaces
probemapper Connects to QBRC's ProbeMapper platform
processdata Process Data
prodlim Product Limit Estimation
productplots NA
profdpm Profile Dirichlet Process Mixtures
profileModel Tools for profiling inference functions for various model classes
profr An alternative display for profiling information
proftools Profile Output Processing Tools for R
proj4 A simple interface to the PROJ.4 cartographic projections library
proptest Tests of the Proportional Hazards Assumption
proto Prototype object-based programming
protoclust Hierarchical clustering with prototypes
proxy Distance and Similarity Measures
pscl Political Science Computational Laboratory, Stanford University
pseudo Pseudo - observations
psgp Projected Spatial Gaussian Process (psgp) methods
pso Particle Swarm Optimization
pspearman Spearman's rank correlation test
pspline Penalized Smoothing Splines
psy Various procedures used in psychometry
psych Procedures for Psychological, Psychometric, and Personality Research
psychometric Applied Psychometric Theory
psychotree Recursive Partitioning Based on Psychometric Models
psyphy Functions for analyzing psychophysical data in R
ptinpoly Point-In-Polyhedron Test (3D)
ptw Parametric Time Warping
pvclass P-values for Classification
pvclust Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
pwr Basic functions for power analysis
pwt Penn World Table
pxR PC-Axis with R
pycno Pycnophylactic Interpolation
pyramid Functions to draw population pyramid
QCA Qualitative Comparative Analysis
QCA3 Yet another package for Qualitative Comparative Analysis
QCAGUI QCA Graphical User Interface
QRMlib Provides R-language code to examine Quantitative Risk Management concepts
QSARdata Quantitative Structure Activity Relationship (QSAR) Data Sets
QT QT Knowledge Management System
QTLNetworkR Interactive software package for QTL visualization
QTLRel Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree
QuACN This package offers a set of topological network measures to analyze complex Networks structurally
QuantPsyc Quantitative Psychology Tools
qAnalyst Control Charts, Capability and Distribution Identification
qat Quality Assurance Toolkit
qcc Quality Control Charts
qgraph Network representations of relationships in data
qlspack Quasi Least Square Package
qp q-order partial correlation graph search algorithm
qpcR Modelling and analysis of real-time PCR data
qrnn Quantile regression neural network
qtl Tools for analyzing QTL experiments
qtlDesign Design of QTL experiments
qtlbim QTL Bayesian Interval Mapping
qtlbook Datasets for the R/qtl book
qtlmt Tools for mapping multiple complex traits
quadprog Functions to solve Quadratic Programming Problems
qualV Qualitative Validation Methods
qualityTools Statistical Methods for Quality Science
quantchem Quantitative chemical analysis: calibration and evaluation of results
quantmod Quantitative Financial Modelling Framework
quantreg Quantile Regression
quantregForest Quantile Regression Forests
quaternions Arithmetics and linear algebra with Quaternions
queueing Basic Markovian queueing models
qvalue Q-value estimation for false discovery rate control
qvcalc Quasi variances for factor effects in statistical models
R.cache Fast and light-weight caching (memoization) of objects
R.filesets Easy handling of and access to files organized in structured directories
R.huge Methods for accessing huge amounts of data [DEPRECATED]
R.matlab Read and write of MAT files together with R-to-Matlab connectivity
R.methodsS3 Utility function for defining S3 methods
R.oo R object-oriented programming with or without references
R.rsp Dynamic generation of scientific reports
R.utils Various programming utilities
R1magic Compressive Sampling: Sparse signal recovery utilities
R2Cuba Multidimensional Numerical Integration
R2HTML HTML exportation for R objects
R2PPT Simple R Interface to Microsoft PowerPoint using rcom
R2SWF Convert R Graphics to Flash Animations
R2WinBUGS Running WinBUGS and OpenBUGS from R / S-PLUS
R2jags A Package for Running jags from R
R2wd Write MS-Word documents from R
R4dfp 4dfp MRI Image Read and Write Routines
RAD Fit RAD models to biological data
RANN Fast Nearest Neighbour Search
RArcInfo Functions to import data from Arc/Info V7.x binary coverages
RAtmosphere Standard Atmosperic profiles
RBGL An interface to the BOOST graph library
RBerkeley R API to Oracle Berkeley DB
RBloomberg R/Bloomberg
RBrownie Continuous and discrete ancestral character reconstruction and evolutionary rate tests
RC Reproducible Computing
RColorBrewer ColorBrewer palettes
RCurl General network (HTTP/FTP/…) client interface for R
RDS R Functions for Respondent-Driven Sampling
RDieHarder R interface to the dieharder RNG test suite
REEMtree Regression Trees with Random Effects for Longitudinal (Panel) Data
REQS R/EQS Interface
RExcelInstaller Integration of R and Excel, (use R in Excel, read/write XLS files)
RFA Regional Frequency Analysis
RFLPtools Tools to analyse RFLP data
RFOC Graphics for Spherical Distributions and Earthquake Focal Mechanisms
RFinanceYJ RFinanceYJ
RFreak R/FrEAK interface
RGCCA Regularized Generalized Canonical Correlation Analysis
RGraphics Data and Functions from the book R Graphics, Second Edition
RGtk2 R bindings for Gtk 2.8.0 and above
RGtk2Extras Data frame editor and dialog making wrapper for RGtk2
RH2 DBI/RJDBC interface to h2 Database
RHRV Heart rate variability analysis of ECG data
RHmm Hidden Markov Models simulations and estimations
RISmed Search Pubmed, Make bibliographic content analyzable
RImageJ R bindings for ImageJ
RInside C++ classes to embed R in C++ applications
RItools Randomization inference tools
RJDBC Provides access to databases through the JDBC interface
RJSONIO Serialize R objects to JSON, JavaScript Object Notation
RJaCGH Reversible Jump MCMC for the analysis of CGH arrays
RKEA R/KEA interface
RLMM A Genotype Calling Algorithm for Affymetrix SNP Arrays
RLRsim Exact (Restricted) Likelihood Ratio tests for mixed and additive models
RLadyBug Analysis of Infectious Diseases using Stochastic Epidemic Models
RLastFM R interface to last.fm API
RM2 Revenue Management and Pricing Package
RMAWGEN RMAWGEN (R Multi-site Auto-regressive Weather GENeretor): a package to generate daily time series from monthly mean values
RMC Functions for fitting Markov models
RMTstat Distributions, Statistics and Tests derived from Random Matrix Theory
RMark R Code for MARK Analysis
RMediation An R Package for Mediation Analysis
RMySQL R interface to the MySQL database
RNCBI The java ncbi interface to R
RNCBIAxis2Libs Axis2 libraries for use in the R environment
RNCBIEUtilsLibs EUtils libraries for use in the R environment
RNCEP Obtain, organize, and visualize NCEP weather data
RNetCDF R Interface to NetCDF Datasets
RNetLogo Provides an interface to the agent-based modelling plattform NetLogo
RNiftyReg Medical image registration using the NiftyReg library
ROAuth R interface for OAuth
ROCR Visualizing the performance of scoring classifiers
ROCwoGS Non-parametric estimation of ROC curves without Gold Standard Test
RODBC ODBC Database Access
RODM R interface to Oracle Data Mining
ROptEst Optimally robust estimation
ROptEstOld Optimally robust estimation - old version
ROptRegTS Optimally robust estimation for regression-type models
ROracle Oracle database interface for R
ROracleUI Convenient Tools for Working with Oracle Databases
RPMG Graphical User Interface (GUI) for interactive R analysis sessions
RPMM Recursively Partitioned Mixture Model
RPPanalyzer Reads, annotates, and normalizes reverse phase protein array data
RPostgreSQL R interface to the PostgreSQL database system
RProtoBuf R Interface to the Protocol Buffers API
RPyGeo ArcGIS Geoprocessing in R via Python
RQDA R-based Qualitative Data Analysis
RQuantLib R interface to the QuantLib library
RSAGA SAGA Geoprocessing and Terrain Analysis in R
RSEIS Seismic Time Series Analysis Tools
RSNNS Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
RSQLite SQLite interface for R
RSQLite.extfuns Math and String Extension Functions for RSQLite
RSVGTipsDevice An R SVG graphics device with dynamic tips and hyperlinks
RScaLAPACK A seamless interface to perform parallel computation on linear algebra problems using the ScaLAPACK library
RSearchYJ RSearchYJ
RSiena Siena - Simulation Investigation for Empirical Network Analysis
RSiteSearch RSiteSearch
RStackExchange R based StackExchange client
RSurvey Analysis of Spatially Distributed Data
RSvgDevice An R SVG graphics device
RTAQ RTAQ: Tools for the analysis of trades and quotes in R
RTOMO Visualization for seismic tomography
RTextTools Automatic Text Classification via Supervised Learning
RTisean R interface to Tisean algorithms
RUnit R Unit test framework
RVAideMemoire Diverse basic statistical and graphical functions accompanying the french book 'Aide-memoire de statistique appliquee a la biologie'
RWebMA RWebMA
RWeka R/Weka interface
RWekajars R/Weka interface jars
RWinEdt R-WinEdt
RXKCD Get XKCD comic from R
RXMCDA RXMCDA
RXshrink Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
RadioSonde Tools for plotting skew-T diagrams and wind profiles
RandForestGUI RandForestGUI
RandVar Implementation of random variables
RandomFields Simulation and Analysis of Random Fields
RankAggreg Weighted rank aggregation
RaschSampler Rasch Sampler
Rassoc Robust tests for case-control genetic association studies
Ratings Model-based Ratings Figures
Rcapture Loglinear Models for Capture-Recapture Experiments
Rcgmin Conjugate gradient minimization of nonlinear functions with box constraints
Rcmdr R Commander
RcmdrPlugin.BCA Rcmdr Plug-In for Business and Customer Analytics
RcmdrPlugin.DoE R Commander Plugin for (industrial) Design of Experiments
RcmdrPlugin.EHESsampling Tools for sampling in European Health Examination Surveys (EHES)
RcmdrPlugin.Export Graphically export output to LaTeX or HTML
RcmdrPlugin.FactoMineR Graphical User Interface for FactoMineR
RcmdrPlugin.HH Rcmdr support for the HH package
RcmdrPlugin.IPSUR An IPSUR Plugin for the R Commander
RcmdrPlugin.KMggplot2 Rcmdr Plug-In for Kaplan-Meier Plot and Other Plots by Using the ggplot2 Package
RcmdrPlugin.MAc Meta-Analysis with Correlations (MAc) Rcmdr Plug-in
RcmdrPlugin.MAd Meta-Analysis with Mean Differences (MAd) Rcmdr Plug-in
RcmdrPlugin.PT Some discrete exponential dispersion models: Poisson-Tweedie
RcmdrPlugin.SLC SLC Rcmdr Plug-in
RcmdrPlugin.SensoMineR Graphical User Interface for SensoMineR
RcmdrPlugin.SurvivalT Rcmdr Survival Plug-In
RcmdrPlugin.TeachingDemos Rcmdr Teaching Demos Plug-In
RcmdrPlugin.TextMining Rcommander plugin for "tm" package
RcmdrPlugin.coin Rcmdr Coin Plug-In
RcmdrPlugin.depthTools R commander Depth Tools Plug-In
RcmdrPlugin.doex Rcmdr plugin for Stat 4309 course
RcmdrPlugin.epack Rcmdr plugin for time series
RcmdrPlugin.mosaic Adds menu items to produce mosaic plots and assoc plots to Rcmdr
RcmdrPlugin.orloca orloca Rcmdr Plug-in
RcmdrPlugin.qcc Rcmdr qcc Plug-In
RcmdrPlugin.qual Rcmdr plugin for quality control course
RcmdrPlugin.sos Efficiently search R Help pages
RcmdrPlugin.steepness Steepness Rcmdr Plug-in
RcmdrPlugin.survival R Commander Plug-in for the survival Package
Rcplex R interface to CPLEX
Rcpp Seamless R and C++ Integration
RcppArmadillo Rcpp integration for Armadillo templated linear algebra library
RcppBDT Rcpp bindings for the Boost Date_Time library
RcppClassic Deprecated 'classic' Rcpp API
RcppDE Global optimization by differential evolution in C++
RcppEigen Rcpp integration for the Eigen templated linear algebra library
RcppExamples Examples using Rcpp to interface R and C++
RcppGSL Rcpp integration for GNU GSL vectors and matrices
Rcsdp R interface to the CSDP semidefinite programming library
Rd2roxygen Convert Rd to roxygen documentation and utilities to improve documentation
Rdsm Threads Environment for R
ReacTran Reactive transport modelling in 1D, 2D and 3D
Read.isi Automated access to old World Fertility Survey data saved in fixed-width format based on ISI-formatted codebooks
ReadImages Image Reading Module for R
RecordLinkage Record Linkage in R
Records Record Values and Record Times
RelativeRisk Relative Risk
Reliability Functions for estimating parameters in software reliability models
Renext Renewal method for extreme values extrapolation
RepeatedHighDim Detection of global group effect in microarrays data
ResearchMethods Using GUIs to help teach statistics to non-statistics students
ResistorArray electrical properties of resistor networks
ResourceSelection Resource Selection (Probability) Functions for Use-Availability Data
Rfit Rank Estimation for Linear Models
Rfun Funy application of R
RghcnV3 Global Historical Climate Network Version 3
Rglpk R/GNU Linear Programming Kit Interface
RgoogleMaps Overlays on Google map tiles in R
Rhh Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation
RiDMC R interface to the idmclib library
Rigroup Rigroup: Provides small integer group functions
Rjms R messaging using ActiveMQ and jms
Rjmsjars Rjms jars
Rknots Rknots
Rlab Functions and Datasets Required for ST370 class
Rlabkey Data exchange between R and LabKey Server
Rmpfr R MPFR - Multiple Precision Floating-Point Reliable
Rmpi Interface (Wrapper) to MPI (Message-Passing Interface)
RnavGraph Using graphs as a navigational infrastructure
RnavGraphImageData Some image data used in the RnavGraph package demos
Rniftilib Rniftilib - R Interface to NIFTICLIB (V1.1.0)
RobAStBase Robust Asymptotic Statistics
RobLox Optimally robust influence curves and estimators for location and scale
RobLoxBioC Infinitesimally robust estimators for preprocessing omics data
RobRex Optimally robust influence curves for regression and scale
RobustAFT Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and logWeibull case
RobustRankAggreg Methods for robust rank aggregation
Rook Rook - a web server interface for R
Rpad Workbook-style, web-based interface to R
RpgSQL DBI/RJDBC interface to PostgreSQL Database
Rramas Matrix population models
Rserve Binary R server
Rsge Interface to the SGE Queuing System
Rsolnp General Non-linear Optimization
Rssa A collection of methods for singular spectrum analysis
Rstem Interface to Snowball implementation of Porter's word stemming algorithm
Rsundials Suite of Nonlinear Differential Algebraic Equations Solvers in R
Rsymphony Symphony in R
RthroughExcelWorkbooksInstaller Excel Workbooks supporting Statistics courses using 'R through Excel'
Runiversal Runiversal - Package for converting R objects to Java variables and XML
Runuran R interface to the UNU.RAN random variate generators
RunuranGUI A GUI for the UNU.RAN random variate generators
Rvelslant Downhole Seismic Analysis in R
Rvmmin Variable metric nonlinear function minimization with bounds constraints
Rwave Time-Frequency analysis of 1-D signals
Rwinsteps Running Winsteps in R
RxCEcolInf R x C Ecological Inference With Optional Incorporation of Survey Information
Ryacas R interface to the yacas computer algebra system
Rz GUI Tool for Data Management like SPSS or Stata
r2dRue 2d Rain Use Efficience model
r2lh R to LaTeX and HTML
r4ss R code for Stock Synthesis
rAverage Parameter estimation for the Averaging model of Information Integration Theory
rCUR CUR decomposition package
rChoiceDialogs rChoiceDialogs collection
rDNA R Bindings for the Discourse Network Analyzer
rEMM Extensible Markov Model (EMM) for Data Stream Clustering in R
rJPSGCS R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS)
rJava Low-level R to Java interface
rJavax rJava extensions
rJython R interface to Python via Jython
rPorta R/PORTA interface
rSymPy R interface to SymPy computer algebra system
rTOFsPRO Time-of-flight mass spectra signal processing
rWMBAT The William and Mary Bayesian Analysis Tool
race Racing methods for the selection of the best
rainbow Rainbow plots, bagplots and boxplots for functional data
rake Normalize sample weights using marginal total population weights
ramps Bayesian Geostatistical Modeling with RAMPS
randaes Random number generator based on AES cipher
random True random numbers using random.org
random.polychor.pa A Parallel Analysis With Polychoric Correlation Matrices
randomForest Breiman and Cutler's random forests for classification and regression
randomLCA Random Effects Latent Class Analysis
randomNames Random name generating function and data set
randomSurvivalForest Random Survival Forests
randtoolbox toolbox for pseudo and quasi random number generation and RNG tests
rangeMapper A platform for the study of macroecology of life history traits
rankhazard Rank-hazard plots
rasclass Supervised Raster Image Classification
raster Geographic analysis and modeling with raster data
rasterVis Visualization methods for the raster package
rateratio.test Exact rate ratio test
rattle Graphical user interface for data mining in R
rbenchmark Benchmarking routine for R
rbounds Perform Rosenbaum bounds sensitivity tests for matched data
rbugs Fusing R and OpenBugs
rcdd rcdd (Computational Geometry)
rcdk rcdk - Interface to the CDK Libraries
rcdklibs rcdklib - CDK libraries packaged for R
rcom R COM Client Interface and internal COM Server
rconifers R interface to the CONIFERS forest growth model
rda Shrunken Centroids Regularized Discriminant Analysis
rdatamarket Data access API for DataMarket.com
rdetools Relevant Dimension Estimation (RDE) in Feature Spaces
rdyncall Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
readBrukerFlexData Reads mass spectrometry data in Bruker *flex format
readMzXmlData Reads mass spectrometry data in mzXML format
realized Realized
rebmix The Rebmix Package
recommenderlab Lab for Testing and Developing Recommender Algorithms for Binary Data
ref References for R
refund Regression with Functional Data
registry Registry infrastructure
reglogit Simulation-based Regularized Logistic Regression
regress Gaussian linear models with linear covariance structure
regsubseq Detect and Test Regular Sequences and Subsequences
regtest Regression testing
rela Item Analysis Package with Standard Errors
relaimpo Relative importance of regressors in linear models
relations Data Structures and Algorithms for Relations
relax relax – R Editor for Literate Analysis and lateX
relaxo Relaxed Lasso
reldist Relative Distribution Methods
relevent Relational Event Models
reliaR Package for some probability distributions
relimp Relative Contribution of Effects in a Regression Model
relsurv Relative survival
remMap Regularized Multivariate Regression for Identifying Master Predictors
remix Remix your data
repolr Repeated measures proportional odds logistic regression
reportr A general message and error reporting system
reporttools Generate LaTeX tables of descriptive statistics
reshape Flexibly reshape data
reshape2 Flexibly reshape data: a reboot of the reshape package
reshapeGUI A GUI for the reshape2 and plyr packages
review Manage Review Logs
revoIPC Shared memory parallel framework for multicore machines
reweight Adjustment of Survey Respondent Weights
rfPermute Estimate permutation p-values for importance metrics
rgam Robust Generalized Additive Model
rgcvpack R Interface for GCVPACK Fortran Package
rgdal Bindings for the Geospatial Data Abstraction Library
rgenoud R version of GENetic Optimization Using Derivatives
rgeos Interface to Geometry Engine - Open Source (GEOS)
rggobi Interface between R and GGobi
rgl 3D visualization device system (OpenGL)
rgp R genetic programming framework
rgr The GSC Applied Geochemistry EDA Package
rgrs Functions to make R usage in social sciences easier (in french)
rhosp Side effect risks in hospital : simulation and estimation
rich Species richness estimation and comparison
richards Richards curves
rimage Image Processing Module for R
rindex Indexing for R
ringscale Ringscale
rioja Analysis of Quaternary Science Data
risksetROC Riskset ROC curve estimation from censored survival data
rjags Bayesian graphical models using MCMC
rje Miscellaneous useful functions
rjson JSON for R
rlecuyer R interface to RNG with multiple streams
rmac calculate RMAC or FMAC agreement coefficients
rmeta Meta-analysis
rmetasim An individual-based population genetic simulation environment
rminer Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
rms Regression Modeling Strategies
rneos rneos: XML-RPC Interface to NEOS
rngWELL toolbox for WELL random number generators
rngwell19937 WELL19937a random number generator implemented with 53 bit output
robCompositions Robust Estimation for Compositional Data
robeth R functions for robust statistics
robfilter Robust Time Series Filters
robust Insightful Robust Library
robustX eXperimental eXtraneous eXtraordinary … Functionality for Robust Statistics
robustbase Basic Robust Statistics
robustreg Robust Regression Functions
rocc ROC based classification
rocplus ROC, Precision-Recall, Convex Hull and other plots
rootSolve Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations
roxygen Literate Programming in R
roxygen2 In-source documentation for R
rpanel Simple Interactive Controls for R Using the tcltk Package
rpart Recursive Partitioning
rpart.plot Plot rpart models. An enhanced version of plot.rpart
rpartOrdinal Ordinal classification tree functions
rphast R interface to PHAST software for comparative genomics
rpsychi Statistics for psychiatric research
rpubchem rpubchem - Interface to the PubChem Collection
rpud R functions for computation on GPU
rpvm R interface to PVM (Parallel Virtual Machine)
rqmcmb2 Markov Chain Marginal Bootstrap for Quantile Regression
rrBLUP Ridge Regression-BLUP and related methods for genomic selection
rrcov Scalable Robust Estimators with High Breakdown Point
rrcovNA Scalable Robust Estimators with High Breakdown Point for Incomplete Data
rrdf rrdf - support for the Resource Description Framework
rrdflibs rrdflibs - package with Jena libraries for use with rrdf
rredis Redis client for R
rrp Random Recursive Partitioning
rrules Generic rule engine for R
rrv Random Return Variables
rsae Robust Small Area Estimation
rscproxy statconn: provides portable C-style interface to R (StatConnector)
rsdepth Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis
rseedcalc Estimation of Proportion of GM Stacked Seeds in Seed Lots
rsm Response-surface analysis
rsprng R interface to SPRNG (Scalable Parallel Random Number Generators)
rstream Streams of random numbers
rtape Manage and manipulate large collections of R objects stored as tape-like files
rtfbs R Transcription Factor Binding Site identification tool
rtiff A tiff reader for R
rtv Random Time Variables
runjags Interface utilities for JAGS (using BUGS syntax) and Apple Xgrid distributed computing clusters
rv Simulation-based random variable object class in R
rvgtest Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
rvmbinary RVM Binary Classification
rwm R Workspace Management
rworldmap For mapping global data : rworldmap
rwt Rice Wavelet Toolbox wrapper
rysgran Grain size analysis, textural classifications and distribuition of uncosolidated sediments
SAFD Statistical Analysis of Fuzzy Data
SAPP Statistical Analysis of Point Processes
SASPECT Significant AnalysiS of PEptide CounTs
SASmixed Data sets from "SAS System for Mixed Models"
SASxport Read and Write SAS XPORT Files
SBSA Simplified Bayesian Sensitivity Analysis
SDDA Stepwise Diagonal Discriminant Analysis
SDMTools Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
SDaA Sampling: Design and Analysis
SDisc Integrated methodology for the identification of homogeneous profiles in data distribution
SE.IGE Standard errors of estimated genetic parametes
SEL Semiparametric elicitation
SEMModComp Model Comparisons for SEM
SGCS Spatial Graph based Clustering Summaries for spatial point patterns
SGP An R Package for the Calculation and Visualization of Student Growth Percentiles
SHARE SNP-Haplotype Adaptive REgression (SHARE)
SHIP SHrinkage covariance Incorporating Prior knowledge
SII Calculate ANSI S3.5-1997 Speech Intelligibility Index
SIN A SINful Approach to Selection of Gaussian Graphical Markov Models
SIS Sure Independence Screening
SLC Slope and level change
SMCP Smoothed minimax concave penalization (SMCP) method for genome-wide association studies
SMIR Companion to Statistical Modelling in R
SMPracticals Practicals for use with Davison (2003) Statistical Models
SMVar Structural Model for variances
SNPRelate Parallel Computing Toolset for genome-wide association studies
SNPassoc SNPs-based whole genome association studies
SNPmaxsel Maximally selected statistics for SNP data
SOAR Memory management in R by delayed assignments
SPACECAP A Program to Estimate Animal Abundance and Density using Spatially-Explicit Capture-Recapture
SPARQL SPARQL client
SPECIES Statistical package for species richness estimation
SPIAssay A genetic-based assay for the identification of cell lines
SPOT Sequential Parameter Optimization
SQLiteDF Stores data frames & matrices in SQLite tables
SQLiteMap Wrapper to spatialite functions
SQN subset quantile normalization
SQUAREM Squared extrapolation methods for accelerating fixed-point iterations
SRPM Shared Reproducibility Package Management
SSSR Server Side Scripting with R
SSsimple State space models
STAR Spike Train Analysis with R
SV Quasi-likelihood and indirect inference in non-Gaussian stochastic volatility models
SVGMapping Map experimental data on custom-made SVG file
SVMMaj SVMMaj algorithm
SWordInstaller SWord: Use R in Microsoft Word (Installer)
SYNCSA SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities
SampleSizeMeans Sample size calculations for normal means
SampleSizeProportions Calculating sample size requirements when estimating the difference between two binomial proportions
SamplerCompare A framework for comparing the performance of MCMC samplers
SamplingStrata Optimal stratification of sampling frames for multipurpose sampling surveys
SciViews SciViews GUI API - Main package
ScottKnott The ScottKnott Clustering Algoritm
SearchTrees Spatial Search Trees
SemiPar Semiparametic Regression
SemiParBIVProbit Semiparametric Bivariate Probit Modelling
SenSrivastava Datasets from Sen & Srivastava
SensoMineR Sensory data analysis with R
SeqKnn Sequential KNN imputation method
SiZer SiZer: Significant Zero Crossings
SigWinR SigWin-detector implementation in R
Sim.DiffProc Simulation of Diffusion Processes
Sim.DiffProcGUI Graphical User Interface for Simulation of Diffusion Processes
SimComp Simultaneous Comparisons for Multiple Endpoints
SimpleTable Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding
SimultAnR Correspondence and Simultaneous Analysis
SixSigma Six Sigma Tools for Quality and Process Improvement
SkewHyperbolic The Skew Hyperbolic Student t-distribution
Sleuth2 Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)"
SlimPLS SlimPLS multivariate feature selection
Snowball Snowball Stemmers
SoDA Functions and Exampels for "Software for Data Analysis"
SortableHTMLTables Turns a data frame into an HTML file containing a sortable table
SparseM Sparse Linear Algebra
SpatialEpi Performs various spatial epidemiological analyses
SpatialExtremes Modelling Spatial Extremes
SpatialNP Multivariate nonparametric methods based on spatial signs and ranks
SpatioTemporal Spatio-Temporal Model Estimation
SpeciesMix Fit Mixtures of Archetype species
SpectralGEM Discovering Genetic Ancestry Using Spectral Graph Theory
SpherWave Spherical Wavelets and SW-based Spatially Adaptive Methods
StMoSim Simulate QQ-Norm-Plot
StatDA Statistical Analysis for Environmental Data
StatDataML implementation of the StatDataML proposal
StatFingerprints StatFingerprints
StatMatch Statistical Matching
Stem Spatio-temporal models in R
StreamMetabolism Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves
SubpathwayMiner A software package for annotation and identification of the KEGG pathways
SuppDists Supplementary distributions
SweaveListingUtils Utilities for Sweave together with TeX listings package
SwissAir Air Quality Data of Switzerland for one year in 30 min Resolution
SyNet Inference and Analysis of Sympatry Networks
Synth Synthetic Control Group Method for Comparative Case Studies
s20x Stats 20x
s3x Enhanced S3-Based Programming
s4vd Biclustering via sparse singular value decomposition incorporating stability selection
sBF Smooth Backfitting
sabreR Multivariate Generalized Linear Mixed Models
sac Semiparametric Analysis of Changepoint
saemix Stochastic Approximation Expectation Maximization (SAEM) algorithm
safeBinaryRegression Safe Binary Regression
sampSurf Sampling Surface Simulation for Areal Sampling Methods
sampfling Sampford sampling (w/o replacement and unequal probabilities)
sampleSelection Sample Selection Models
samplesize a collection of sample size functions
sampling Survey Sampling
samplingbook Survey Sampling Procedures
samr SAM: Significance Analysis of Microarrays
sandwich Robust Covariance Matrix Estimators
sapa Insightful Spectral Analysis for Physical Applications
sas7bdat SAS Database Reader (experimental)
satin Functions for reading and displaying satellite data for oceanographic applications with R
saves Fast load variables
saws Small-Sample Adjustments for Wald tests Using Sandwich Estimators
sbgcop Semiparametric Bayesian Gaussian copula estimation and imputation
sca Simple Component Analysis
scaRabee Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
scagnostics Compute scagnostics - scatterplot diagnostics
scaleCoef Scale regression coefficients
scaleboot Approximately Unbiased P-values via Multiscale Bootstrap
scape Statistical Catch-at-Age Plotting Environment
scapeMCMC MCMC Diagnostic Plots
scatterplot3d 3D Scatter Plot
schoolmath Functions and datasets for math used in school
schwartz97 A package on the Schwartz two-factor commodity model
sciplot Scientific Graphing Functions for Factorial Designs
scout Implements the Scout method for Covariance-Regularized Regression
scrapeR Tools for Scraping Data from HTML and XML Documents
scrime Analysis of High-Dimensional Categorical Data such as SNP Data
scriptests Transcript-based unit tests that are easy to create and maintain
scuba Scuba diving calculations and decompression models
sculpt3d A simple toolbar GUI for brushing RGL plots
sda Shrinkage Discriminant Analysis and CAT Score Variable Selection
sdcMicro Statistical Disclosure Control methods for the generation of public- and scientific-use files
sdcMicroGUI Graphical user interface for package sdcMicro
sdcTable statistical disclosure control for tabular data
sddpack Semidiscrete Decomposition
sde Simulation and Inference for Stochastic Differential Equations
sdef Synthesizing List of Differentially Expressed Features
sdtalt Signal detection theory and alternatives
sdtoolkit Scenario Discovery Tools to Support Robust Decision Making
seacarb seawater carbonate chemistry with R
seas Seasonal analysis and graphics, especially for climatology
season Seasonal analysis of health data
secr Spatially explicit capture-recapture
seewave Time wave analysis and graphical representation
seg A set of tools for residential segregation research
segclust SegClust : a package for Segmentation and Segmentation/Clustering
segmented Segmented relationships in regression models
selectMeta Estimation of weight functions in meta analysis
selectiongain gain of a model selection
sem Structural Equation Models
semPLS Structural Equation Modeling Using Partial Least Squares
sendmailR send email using R
sendplot Tool for sending interactive plots with tool-tip content
sensR Thurstonian models for sensory discrimination
sensitivity Sensitivity Analysis
sensitivityPStrat Principal Stratification Sensitivity Analysis Functions
separationplot Separation Plots
seqCBS CN Profiling using Sequencing and CBS
seqRFLP Simulation and visualization of restriction enzyme cutting pattern from DNA sequences
seqinr Biological Sequences Retrieval and Analysis
seqmon Sequential Monitoring of Clinical Trials
seriation Infrastructure for seriation
session Functions for interacting with, saving and restoring R sessions
setRNG Set (Normal) Random Number Generator and Seed
sets Sets, Generalized Sets, Customizable Sets and Intervals
sfa Stochastic Frontier Analysis
sfsmisc Utilities from Seminar fuer Statistik ETH Zurich
sgeostat An Object-oriented Framework for Geostatistical Modeling in S+
shape Functions for plotting graphical shapes, colors
shapefiles Read and Write ESRI Shapefiles
shapes Statistical shape analysis
sharx Models and Data Sets for the Study of Species-Area Relationships
siar Stable Isotope Analysis in R
siatclust Shenzhen Institutes of Advanced Technology Clustering Suite
sideChannelAttack Side Channel Attack
sifds Swedish inflation forecast data set
sigclust Statistical Significance of Clustering
signal Signal processing
signalextraction Real-Time Signal Extraction (Direct Filter Approach)
simFrame Simulation framework
simPopulation Simulation of synthetic populations for surveys based on sample data
simba A Collection of functions for similarity analysis of vegetation data
simboot Simultaneous Confidence Intervals and Adjusted p–values for Diversity Indices
simco A package to import Structure files and deduce similarity coefficients from them
simctest Sequential (or Safe) Implementation of Monte Carlo tests with uniformly bounded resampling risk
simecol Simulation of ecological (and other) dynamic systems
simex SIMEX- and MCSIMEX-Algorithm for measurement error models
simexaft simexaft
similarityRichards Similarity of Richards curves
simone Statistical Inference for MOdular NEtworks (SIMoNe)
simpleboot Simple Bootstrap Routines
sinartra A simple web app framework for R, based on sinatra
sisus SISUS: Stable Isotope Sourcing using Sampling
skellam Skellam distribution
skewt The Skewed Student-t Distribution
skills Skills in Knowledge Space Theory
skmeans Spherical k-Means Clustering
slam Sparse Lightweight Arrays and Matrices
sm Smoothing methods for nonparametric regression and density estimation
smacof SMACOF for Multidimensional Scaling
smatr (Standardised) Major Axis Estimation and Testing Routines
smco A simple Monte Carlo optimizer using adaptive coordinate sampling
smirnov Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book
smoothSurv Survival Regression with Smoothed Error Distribution
smoothmest Smoothed M-estimators for 1-dimensional location
smoothtail Smooth Estimation of GPD Shape Parameter
sn The skew-normal and skew-t distributions
sna Tools for Social Network Analysis
snort Social Network-Analysis On Relational Tables
snow Simple Network of Workstations
snowFT Fault Tolerant Simple Network of Workstations
snowfall Easier cluster computing (based on snow)
snp.plotter snp.plotter
snpXpert Tools to analysis SNP data
softclassval Soft classification performance measures
soil.spec Soil spectral data exploration and regression functions
soiltexture Functions for soil texture plot, classification and transformation
solaR Solar Photovoltaic Systems
som Self-Organizing Map
soma General-purpose optimisation with the Self-Organising Migrating Algorithm
someKfwer Controlling the Generalized Familywise Error Rate
someMTP Some Multiple Testing Procedures
somplot Visualisation of hexagonal Kohonen maps
sos sos
sos4R An R client for the OGC Sensor Observation Service
sound A Sound Interface for R
sp classes and methods for spatial data
spBayes Univariate and Multivariate Spatial Modeling
spa Implements The Sequential Predictions Algorithm
spaa SPecies Association Analysis
space Sparse PArtial Correlation Estimation
spacetime classes and methods for spatio-temporal data
spacodiR Spatial and Phylogenetic Analysis of Community Diversity
spam SPArse Matrix
sparcl Perform sparse hierarchical clustering and sparse k-means clustering
sparkTable Sparklines and graphical tables for tex and html
sparr The sparr package: SPAtial Relative Risk
sparseLDA Sparse Discriminant Analysis
spatcounts Spatial count regression
spatgraphs Graphs for spatial point patterns
spatial Functions for Kriging and Point Pattern Analysis
spatialCovariance Computation of spatial covariance matrices for data on rectangles
spatialkernel Nonparameteric estimation of spatial segregation in a multivariate point process
spatialsegregation Segregation measures for multitype spatial point patterns
spatstat Spatial Point Pattern analysis, model-fitting, simulation, tests
spc Statistical Process Control
spcosa Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata
spd Semi Parametric Distribution
spdep Spatial dependence: weighting schemes, statistics and models
spe Stochastic Proximity Embedding
spectralGP Approximate Gaussian processes using the Fourier basis
speedR A GUI based importing and filtering tool
speedRlibTF speedR's table filter library
speedRlibs Package containing the required libraries (jars) for speedR
speedglm Fitting Linear and Generalized Linear Models to large data sets
spef Semiparametric estimating functions
speff2trial Semiparametric efficient estimation for a two-sample treatment effect
sperich Auxiliary functions to estimate centers of biodiversity
spgrass6 Interface between GRASS 6+ geographical information system and R
spgwr Geographically weighted regression
sphet Spatial Models with heteroskedastic innovations
spi Compute SPI index
spikeSlabGAM Bayesian variable selection and model choice for generalized additive mixed models
spikeslab Prediction and variable selection using spike and slab regression
splancs Spatial and Space-Time Point Pattern Analysis
splinesurv Nonparametric bayesian survival analysis
spls Sparse Partial Least Squares (SPLS) Regression and Classification
splus2R S-PLUS functionality missing from R
sporm Semiparametric proportional odds rate model
sprint Simple Parallel R INTerface
spssDDI Read SPSS System files and produce valid DDI Version 3.0 documents
spsurvey Spatial Survey Design and Analysis
spuRs Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"
sqldf Perform SQL Selects on R Data Frames
squash Color-based plots for multivariate visualization
sra Selection Response Analysis
ssanv Sample Size Adjusted for Nonadherence or Variability of input parameters
ssize.fdr Sample Size Calculations for Microarray Experiments
sspir State Space Models in R
sspline Smoothing Splines on the Sphere
st Shrinkage t Statistic and CAT Score
stab data analysis of drug stability for shelf life estimation
stabledist Stable Distribution Functions
stam Spatio-Temporal Analysis and Modelling
startupmsg Utilities for start-up messages
stashR A Set of Tools for Administering SHared Repositories
statmod Statistical Modeling
statnet Software tools for the Statistical Modeling of Network Data
steepness Testing Steepness of Dominance Hierarchies
stepPlr L2 penalized logistic regression with a stepwise variable selection
stepp Subpopulation Treatment Effect Pattern Plot (STEPP)
stepwise Stepwise detection of recombination breakpoints
stinepack Stineman, a consistently well behaved method of interpolation
stochmod Stochastic Modeling
stockPortfolio Build stock models and analyze stock portfolios
stoichcalc R Functions for Solving Stoichiometric Equations
stratasphere Stratified Spherical Approximate Conditional Modeling
stratification Univariate Stratification of Survey Populations
stratigraph Toolkit for the plotting and analysis of stratigraphic and palaeontological data
stream.net Building and analyzing binary stream networks
stringkernels String Kernel Methods for kernlab
stringr Make it easier to work with strings
strucchange Testing, Monitoring, and Dating Structural Changes
subplex Subplex optimization algorithm
subselect Selecting variable subsets
sudoku Sudoku Puzzle Generator and Solver
sugaR Plots to help optimising diabetes therapy
supclust Supervised Clustering of Predictor Variables such as Genes
superMDS Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)
superpc Supervised principal components
support.CEs Basic functions for supporting an implementation of choice experiments
surv2sample Two-Sample Tests for Survival Analysis
survAUC Estimators of prediction accuracy for time-to-event data
survBayes Fits a proportional hazards model to time to event data by a Bayesian approach
survJamda Survival prediction by joint analysis of microarray gene expression data
survJamda.data survJamda.data
survPresmooth Presmoothed Estimation in Survival Analysis
surveillance Modeling and monitoring discrete response time series
survey analysis of complex survey samples
survival Survival analysis, including penalised likelihood
survivalBIV Estimation of the bivariate distribution function
survivalROC Time-dependent ROC curve estimation from censored survival data
survrec Survival analysis for recurrent event data
svDialogs SciViews GUI API - Dialog boxes
svGUI SciViews GUI API - Functions to manage GUI client
svIDE SciViews GUI API - IDE and code editor functions
svMisc SciViews GUI API - Miscellaneous functions
svSocket SciViews GUI API - R Socket Server
svSweave SciViews GUI API - Sweave functions
svTools SciViews GUI API - Tools (wrapper for packages tools and codetools)
svUnit SciViews GUI API - Unit testing
svWidgets SciViews GUI API - Widgets & Windows
svcR svcR package
svcm 2d and 3d Space-Varying Coefficient Models
svd Interfaces to various state-of-art SVD and eigensolvers
svmpath svmpath: the SVM Path algorithm
swamp Analysis and visualization of high-dimensional data in respect to sample annotations
symbols Symbol plots
symmoments Symbolic Central Moments of the Multivariate Normal Distribution
synchronicity Boost mutex functionality for R
systemfit Estimating Systems of Simultaneous Equations
TAHMMAnnot Mixture model approach to compare two samples of Tiling Array data
TANOVA Time Course Analysis of Variance for Microarray
TEQR Target Equavelence Range Design
TERAplusB Test for A+B Traditional Escalation Rule
TGUICore Teaching GUI - Core functionality
TGUITeaching Teaching GUI - prototype
TIMP a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
TRAMPR TRFLP Analysis and Matching Package for R
TRIANG Symmetric discrete triangular distributions
TRIANGG General discrete triangular distribution
TSA Time Series Analysis
TSAgg Time series Aggregation
TSHRC Two Stage Hazard Rate Comparison
TSMySQL Time Series Database Interface extensions for MySQL
TSP Traveling Salesperson Problem (TSP)
TSPostgreSQL Time Series Database Interface extensions for PostgreSQL
TSSQLite Time Series Database Interface extentions for SQLite
TSdbi Time Series Database Interface
TSfame Time Series Database Interface extensions for fame
TSgetSymbol Time Series Database Interface extension to connect with getSymbols
TShistQuote Time Series Database Interface extensions for get.hist.quote
TSodbc Time Series Database Interface extensions for ODBC
TSpadi Time Series Database Interface extensions for PADI Time Series Server
TSxls Time Series Database Interface extension to connect to spreadsheets
TSzip Time Series Database Interface extension to connect to zip files
TTR Technical Trading Rules
TWIX Trees WIth eXtra splits
TauP.R Earthquake Traveltime Calculations for 1-D Earth Models
TeachingDemos Demonstrations for teaching and learning
TeachingSampling Sampling designs and parameter estimation in finite population
ThreeGroups ML Estimator for Baseline-Placebo-Treatment (Three-group) designs
TilePlot Characterization of functional genes in complex microbial communities using tiling DNA microarrays
Tinflex Tinflex - Universal non-uniform random number generator
TinnR Resources of Tinn-R GUI/Editor for R Environment
ToxLim Incorporating Ecological Data and Associated Uncertainty in Bioaccumulation Modeling
TraMineR Sequences and trajectories mining for social scientists
TradeStrategyAnalyzer Trade Strategy Analyzer
TreePar Estimating speciation and extinction rates based on phylogenies
TreeRank TreeRank
TreeSim Simulating trees under the birth-death model
TripleR Social Relation Model (SRM) analyses for single or multiple round-robin groups
TunePareto Multi-objective parameter tuning for classifiers
TwoPhaseInd Two-Phase Independence
TwoStepCLogit Conditional logistic regression: A two-step estimation method
TwoWaySurvival Additiv Two-Way Hazards Modelling of Right Censored Survival Data
taRifx Collection of utility and convenience functions, and some interesting spatial functions
tableplot Represents tables as semi-graphic displays
tabplot Tableplot, a visualization of large statistical datasets
taskPR Task-Parallel R Package
tau Text Analysis Utilities
tawny Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
tcltk2 Tcl/Tk Additions
tclust Robust Trimmed Clustering
tdm A Tool for Therapeutic Drug Monitoring (TDM)
tdthap TDT tests for extended haplotypes
tensor Tensor product of arrays
tensorA Advanced tensors arithmetic with named indices
termstrc Zero-coupon Yield Curve Estimation
testthat Testthat code. Tools to make testing fun :)
texmex Threshold exceedences and multivariate extremes
textcat N-Gram Based Text Categorization
textir Inverse Regression for Text Analysis
tfer Forensic Glass Transfer Probabilities
tframe Time Frame coding kernel
tframePlus Time Frame coding kernel extensions
tgp Bayesian treed Gaussian process models
tgram Functions to compute and plot tracheidograms
thgenetics Genetic Rare Variants Tests
tiger TIme series of Grouped ERrors
tikzDevice A Device for R Graphics Output in PGF/TikZ Format
tileHMM Hidden Markov Models for ChIP-on-Chip Analysis
time Time tracking for developers
timeDate Rmetrics - Chronological and Calendarical Objects
timeSeries Rmetrics - Financial Time Series Objects
timeordered Time-ordered and time-aggregated network analyses
timereg timereg package for Flexible regression models for survival data
timsac TIMe Series Analysis and Control package
tis Time Indexes and Time Indexed Series
titan Titration analysis for mass spectrometry data
tkrgl TK widget tools for rgl package
tkrplot TK Rplot
tlemix Trimmed Maximum Likelihood Estimation
tlnise Two-level normal independent sampling estimation
tm Text Mining Package
tm.plugin.dc Text Mining Distributed Corpus Plug-In
tm.plugin.mail Text Mining E-Mail Plug-In
tmle Targeted Maximum Likelihood Estimation of additive treatment effect
tmvtnorm Truncated Multivariate Normal and Student t Distribution
tnet tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
tolerance Functions for calculating tolerance intervals
tonymisc Functions for Econometrics Output
topicmodels Topic models
topmodel Implementation of the hydrological model TOPMODEL in R
topologyGSA topologyGSA
tourr Implement tour methods in pure R code
tourrGui A Tour GUI using gWidgets
tpr Temporal Process Regression
track Track Objects
trackObjs Track Objects
tractor.base A package for reading, manipulating and visualising magnetic resonance images
traitr An interface for creating GUIs modeled in part after traits UI module for python
trapezoid The Trapezoidal Distribution
tree Classification and regression trees
treecm Estimating and plotting the centre of mass of a tree
treelet Treelet
treemap Treemap visualization
treethresh Methods for Tree-based Local Adaptive Thresholding
trex Truncated exact test for two-stage case-control design for studying rare genetic variants
triads Triad census for networks
triangle Provides the standard distribution functions for the triangle distribution
trifield Some basic facilities for ternary fields and plots
triggr Fast, simple RPC controller for R
trimcluster Cluster analysis with trimming
trio Detection of disease-associated SNP interactions in case-parent trio data
trip Spatial analysis of animal track data
tripEstimation Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
tripack Triangulation of irregularly spaced data
truncSP Semi-parametric estimators of truncated regression models
truncgof GoF tests allowing for left truncated data
truncnorm Truncated normal distribution
truncreg Truncated Regression Models
trust Trust Region Optimization
tsDyn Nonlinear time series models with regime switching
tsModel Time Series Modeling for Air Pollution and Health
tseries Time series analysis and computational finance
tseriesChaos Analysis of nonlinear time series
tsfa Time Series Factor Analysis
tslars Least angle regression for time series analysis
tsne T-distributed Stochastic Neighbor Embedding for R (t-SNE)
ttime Translate Neurodevelopmental Event Timing Across Species
ttrTests Standard Backtests for Technical Trading Rules in Financial Data
ttutils Utility functions
tuneR Analysis of music and speech
twang Toolkit for Weighting and Analysis of Nonequivalent Groups
tweedie Tweedie exponential family models
twiddler Interactive manipulation of R expressions
twitteR R based Twitter client
two.stage.boot Two-stage cluster sample bootstrap algorithm
twopartqtl QTL Mapping for Point-mass Mixtures
twslm A two-way semilinear model for normalization and analysis of cDNA microarray data
txtplot Text based plots
USPS Unsupervised and Supervised methods of Propensity Score Adjustment for Bias
UScensus2000 US Census 2000 Suite of R Packages
UScensus2000add US Census 2000 Suite of R Packages: Demographic Add
UScensus2000blkgrp US Census 2000 Block Group Shapefiles and Additional Demographic Data
UScensus2000cdp US Census 2000 Designated Places Shapefiles and Additional Demographic Data
UScensus2000tract US Census 2000 Tract Level Shapefiles and Additional Demographic Data
Unicode Unicode data and utilities
UsingR Data sets for the text "Using R for Introductory Statistics"
ucminf General-purpose unconstrained non-linear optimization
udunits2 udunits-2 bindings for R
ump Uniformly Most Powerful Tests
unbalhaar Function estimation via Unbalanced Haar wavelets
uncompress Uncompress
uniCox Univarate shrinkage prediction in the Cox model
uniPlot Uniforms and customizes plots of packages ggplot2, graphics and lattice
unknownR You didn't know you didn't know?
unmarked Models for Data from Unmarked Animals
untb ecological drift under the UNTB
urca Unit root and cointegration tests for time series data
urn Urn : Sampling Without Replacement
VBmix Variational Bayesian mixture models
VGAM Vector Generalized Linear and Additive Models
VHDClassification Discrimination/Classification in very high dimension with linear and quadratic rules
VIF VIF Regression: A Fast Regression Algorithm For Large Data
VIM Visualization and Imputation of Missing Values
VLMC VLMC – Variable Length Markov Chains
VPdtw Variable Penalty Dynamic Time Warping
VarianceGamma The Variance Gamma Distribution
Vdgraph This package creates variance dispersion graphs for response surface designs
VecStatGraphs2D Vector analysis using graphical and analytical methods in 2D
VecStatGraphs3D Vector analysis using graphical and analytical methods in 3D
VennDiagram Generate high-resolution Venn and Euler plots
VhayuR Vhayu R Interface
VisCov Visualizing of distributions of covariance matrices
VizCompX Visualisation of Computer Models
validator External and Internal Validation Indices
varSelRF Variable selection using random forests
varSelectIP Objective Bayes Model Selection
varcompci VARCOMPCI: A Package for Computation of Confidence Intervals for Variance Components of Mixed Models in R
vardiag A package for variogram diagnostics
vars VAR Modelling
vcd Visualizing Categorical Data
vcdExtra vcd additions
vegan Community Ecology Package
vegclust Fuzzy clustering of vegetation data
vegdata Functions to access vegetation databases (Turboveg and VegetWeb) and prepare data for analysis
vegetarian Jost Diversity Measures for Community Data
venneuler Venn and Euler Diagrams
verification Forecast verification utilities
vines Multivariate Dependence Modeling with Vines
violinmplot Combination of violin plot with mean and standard deviation
vioplot Violin plot
viopoints 1-D Scatter Plots with Jitter Using Kernel Density Estimates
visualizationTools Package contains a few functions to visualize statistical circumstances
vmv Visualization of Missing Values
voronoi Methods and applications related to Voronoi tessellations
vowels Vowel Manipulation, Normalization, and Plotting
vrmlgen Generate 3D visualizations for data exploration on the web
vrtest Variance Ratio tests and other tests for Martigale Difference Hypothesis
vwr Useful functions for visual word recognition research
WDI World Development Indicators (World Bank)
WGCNA Weighted Gene Co-Expression Network Analysis
WINRPACK Read in WIN format data
WMBrukerParser William and Mary Parser For Bruker-Ultraflex Mass Spec Data
WMCapacity GUI implementing Bayesian working memory models
WMTregions Exact Calculation of WMTR
WWGbook Functions and datasets for WWGbook
WaveCD Wavelet change point detection for array CGH data
WaveletCo Wavelet Coherence Analysis
WhatIf WhatIf: Software for Evaluating Counterfactuals
WilcoxCV Wilcoxon-based variable selection in cross-validation
WriteXLS Cross-platform Perl based R function to create Excel 2003 (XLS) files
wSVM Weighted SVM with boosting algorithm for improving accuracy
walkscoreAPI Walk Score and Transit Score API
wasim Visualisation and analysis of output files of the hydrological model WASIM
waterfall Waterfall Charts in R
waveband Computes credible intervals for Bayesian wavelet shrinkage
waveclock Time-frequency analysis of cycling cell luminescence data
waved Wavelet Deconvolution
wavelets A package of funtions for computing wavelet filters, wavelet transforms and multiresolution analyses
wavemulcor Wavelet routine for multiple correlation
waveslim Basic wavelet routines for one-, two- and three-dimensional signal processing
wavethresh Wavelets statistics and transforms
wccsom SOM networks for comparing patterns with peak shifts
websockets HTML 5 Websocket Interface for R
weights Weighting and Weighted Statistics
weirs A Hydraulics Package to Compute Open-Channel Flow over Weirs
wgaim Whole Genome Average Interval Mapping for QTL detection using mixed models
wikibooks Functions and datasets of the german WikiBook "GNU R"
wild1 R Tools for Wildlife Research and Management
wle Weighted Likelihood Estimation
wmtsa Insightful Wavelet Methods for Time Series Analysis
wnominate WNOMINATE Roll Call Analysis Software
wombsoft Wombling Computation
wordcloud Word Clouds
wordnet WordNet Interface
wq Exploring water quality monitoring data
write.snns Function for exporting data to SNNS pattern files
wvioplot Weighted violin plot
XLConnect Excel Connector for R
XLConnectJars JAR dependencies for the XLConnect package
XML Tools for parsing and generating XML within R and S-Plus
x12 X12 - wrapper function and GUI
xgobi Interface to the XGobi and XGvis programs for graphical data analysis
xgrid Access Apple Xgrid using R
xlsReadWrite Read and write Excel files (.xls)
xlsx Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
xlsxjars Package required jars for the xlsx package
xpose4 Xpose 4
xpose4classic Xpose 4 Classic Menu System
xpose4data Xpose 4 Data Functions Package
xpose4generic Xpose 4 Generic Functions Package
xpose4specific Xpose 4 Specific Functions Package
xtable Export tables to LaTeX or HTML
xterm256 Support for xterm256 escape sequences
xtermStyle Basic text formatting using xterm escape sequences
xts eXtensible Time Series
YaleToolkit Data exploration tools from Yale University
YieldCurve Modelling and estimation of the yield curve
YjdnJlp Text Analysis by Yahoo! Japan Develper Network
YourCast YourCast
yaImpute yaImpute: An R Package for k-NN Imputation
yacca Yet Another Canonical Correlation Analysis Package
yaml Methods to convert R to YAML and back
yest Gaussian Independence Models
yhat Interpreting Regression Effects
Zelig Everyone's Statistical Software
zic Bayesian Inference for Zero-Inflated Count Models
zipcode U.S. ZIP Code database
zipfR Statistical models for word frequency distributions
zoeppritz Zoeppritz Equations
zoo S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
zyp Zhang + Yue-Pilon trends package
Post preview:
Close preview